PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010544359.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 165aa MW: 18477.7 Da PI: 10.123 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.7 | 9.2e-21 | 57 | 107 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrdp++ng +r++lg++ tae+Aa a+++a+ +++g+ XP_010544359.1 57 YRGVRRRP-WGKYAAEIRDPKKNG--ARIWLGTYETAEDAAMAYDRAAFEMRGA 107 9*******.***********9998..**************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.2E-37 | 56 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-24 | 56 | 115 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-33 | 56 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.065 | 56 | 114 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-14 | 57 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-11 | 57 | 68 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.22E-28 | 57 | 116 | No hit | No description |
PRINTS | PR00367 | 5.7E-11 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 165 aa Download sequence Send to blast |
MEGELACESS SSSSSKVLES IRRYLLEEDE SEEPRSSTEE EGNRKREPPS PVRGGSYRGV 60 RRRPWGKYAA EIRDPKKNGA RIWLGTYETA EDAAMAYDRA AFEMRGAKAK LNFPHLIGTD 120 GVEPARVSNR RRRLPENADP AGKRRSNTSI INIAARLPSL GFRIV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-31 | 53 | 114 | 2 | 63 | ATERF1 |
3gcc_A | 2e-31 | 53 | 114 | 2 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010544359.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC002388 | 3e-32 | AC002388.3 Arabidopsis thaliana chromosome 2 clone T13E15 map m336, complete sequence. | |||
GenBank | AF325089 | 3e-32 | AF325089.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840) mRNA, complete cds. | |||
GenBank | AF370540 | 3e-32 | AF370540.1 Arabidopsis thaliana putative ethylene response element binding protein; EREBP (At2g44840; T13E15.15) mRNA, complete cds. | |||
GenBank | AY072471 | 3e-32 | AY072471.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840; T13E15.15) mRNA, complete cds. | |||
GenBank | AY088387 | 3e-32 | AY088387.1 Arabidopsis thaliana clone 6397 mRNA, complete sequence. | |||
GenBank | CP002685 | 3e-32 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010544359.1 | 1e-115 | PREDICTED: ethylene-responsive transcription factor 13-like | ||||
TrEMBL | A0A1J3G8C6 | 1e-55 | A0A1J3G8C6_NOCCA; Ethylene-responsive transcription factor 13 | ||||
STRING | XP_010544359.1 | 1e-115 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44840.1 | 6e-24 | ethylene-responsive element binding factor 13 |