PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544307.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 463aa    MW: 51137.7 Da    PI: 4.8608
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544307.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29e-192875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTt+Ed +l+++v+++G g+W+++ ++ g+ R++k+c++rw ++l
   XP_010544307.1 28 KGPWTTDEDAILLEYVQEHGEGNWNAVQKHSGLSRCGKSCRLRWVNHL 75
                     79*******************************************996 PP
2Myb_DNA-binding46.67.7e-1581124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T eE+ + +++++++G++ W++ a++++ gRt++++k++w++
   XP_010544307.1  81 KGAFTHEEERRVIELHALMGNK-WARMAAELP-GRTDNEIKNFWNT 124
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4772375IPR017930Myb domain
SuperFamilySSF466891.57E-2926122IPR009057Homeodomain-like
SMARTSM007171.1E-162777IPR001005SANT/Myb domain
PfamPF002493.7E-172875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-232982IPR009057Homeodomain-like
CDDcd001671.31E-123075No hitNo description
PROSITE profilePS5129424.94976130IPR017930Myb domain
SMARTSM007171.4E-1480128IPR001005SANT/Myb domain
PfamPF002497.3E-1481124IPR001005SANT/Myb domain
CDDcd001671.34E-1083126No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2483128IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MPKGRRDSGS GEDSGGSSSR GQGNYLKKGP WTTDEDAILL EYVQEHGEGN WNAVQKHSGL  60
SRCGKSCRLR WVNHLRPDLR KGAFTHEEER RVIELHALMG NKWARMAAEL PGRTDNEIKN  120
FWNTRLKRLQ RAGLPIYPDE VRQQVLTAAQ NGQNVDALAS DDAQGQDLVR SDGSMDIPEI  180
TFNKLGLNSN LVSYPSVPPS TRMIEGNIVD SFGLIPPTSM PTSMPTCHWE PETLFTGMDG  240
YVTNEPEFNF YNCPYDRMGG DDPFRMNLSS YPYFQSTLEQ SSQFNVLPDS HLPGCSSSSS  300
APFADGGKEL ELPSIQYVDN TQNACIWEDN TSDLMPPLES VDTLIQSPLT DHHTLSDCPP  360
SQNNGLLESV LYQSQMLSGS MKAVDSSGMR EVKDTDSVSV SPFLQSSSSI ISQFTPISAS  420
SSGCNSWLER SGGTKPQQES NKRHKSFHGD MIGKLLGEDK YGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-31261285106B-MYB
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00279DAPTransfer from AT2G26960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544307.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544305.10.0PREDICTED: transcription factor MYB104-like isoform X1
RefseqXP_010544307.10.0PREDICTED: transcription factor MYB104-like isoform X3
RefseqXP_010544308.10.0PREDICTED: transcription factor MYB104-like isoform X3
TrEMBLA0A291EX611e-111A0A291EX61_9ROSI; Transcription factor GAMYB
STRINGXP_010544305.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.19e-96myb domain protein 81