PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544306.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 470aa    MW: 51748.4 Da    PI: 4.6706
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544306.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.1e-193885148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTt+Ed +l+++v+++G g+W+++ ++ g+ R++k+c++rw ++l
   XP_010544306.1 38 KGPWTTDEDAILLEYVQEHGEGNWNAVQKHSGLSRCGKSCRLRWVNHL 85
                     79*******************************************996 PP
2Myb_DNA-binding46.67.9e-1591134146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T eE+ + +++++++G++ W++ a++++ gRt++++k++w++
   XP_010544306.1  91 KGAFTHEEERRVIELHALMGNK-WARMAAELP-GRTDNEIKNFWNT 134
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4773385IPR017930Myb domain
SuperFamilySSF466891.61E-2936132IPR009057Homeodomain-like
SMARTSM007171.1E-163787IPR001005SANT/Myb domain
PfamPF002493.8E-173885IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-233992IPR009057Homeodomain-like
CDDcd001671.35E-124085No hitNo description
PROSITE profilePS5129424.94986140IPR017930Myb domain
SMARTSM007171.4E-1490138IPR001005SANT/Myb domain
PfamPF002497.5E-1491134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2493138IPR009057Homeodomain-like
CDDcd001671.38E-1093136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MVGARFIEAW MPKGRRDSGS GEDSGGSSSR GQGNYLKKGP WTTDEDAILL EYVQEHGEGN  60
WNAVQKHSGL SRCGKSCRLR WVNHLRPDLR KGAFTHEEER RVIELHALMG NKWARMAAEL  120
PGRTDNEIKN FWNTRLKRLQ RAGLPIYPDE VRQQVLTAAQ NGQNVDALAS DDAQGQDLVR  180
SDGSMDIPEI TFNKLGLNSN LVSYPSVPPS TRMIEGNIVD SFGLIPPTSM PTSMPTCHWE  240
PETLFTGMDG YVTNEPEFNF YNCPYDRMGG DDPFRMNLSS YPYFQSTLEQ SSQFNVLPDS  300
HLPGCSSSSS APFADGGKEL ELPSIQYVDN TQNACIWEDN TSDLMPPLES VDTLIQSPLT  360
DHHTLSDCPP SQNNGLLESV LYQSQMLSGS MKAVDSSGMR EVKDTDSVSV SPFLQSSSSI  420
ISQFTPISAS SSGQYPLFLY PQDATHGSSG AGGLSLSKNQ TRGTNPFMET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31361385106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00279DAPTransfer from AT2G26960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544306.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544306.10.0PREDICTED: transcription factor MYB104-like isoform X2
TrEMBLA0A291EX611e-111A0A291EX61_9ROSI; Transcription factor GAMYB
STRINGXP_010544305.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.11e-95myb domain protein 81