PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544192.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YA
Protein Properties Length: 292aa    MW: 32019.5 Da    PI: 8.5876
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544192.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.44.9e-33181237158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQyq+I++RRq+Rak+e ekkl +ksrkpylheSRh+hA+rRpRgsgGrF
  XP_010544192.1 181 QEPVYVNAKQYQAIVRRRQARAKAELEKKL-IKSRKPYLHESRHQHAMRRPRGSGGRF 237
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-35179240IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.521180240IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-28182237IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.6E-24183205IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.6E-24214237IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MQSKSESGNQ VVVSDVHPVS SSSIISSEPW WRAVGYNANS FVEAGEKGEN SGKLSVSENQ  60
NTFESNGAKL PPNNAGVDRG DHSHKESHVT ASSQSGGEYT ADNQELTHLL SVIPAAASDE  120
CLTQPPQLEL IGHSVACASW KQFQDPYYGG MMGSCGHQPL GFVSYGEMPH TRMPLPPEVA  180
QEPVYVNAKQ YQAIVRRRQA RAKAELEKKL IKSRKPYLHE SRHQHAMRRP RGSGGRFAKK  240
TEEKGNADDT SYSPVHQGSA YKRREEGDCL GQQLNSMSST ANRPSQTRLA IK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-19181237258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544192.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544186.10.0PREDICTED: nuclear transcription factor Y subunit A-9 isoform X1
RefseqXP_010544189.10.0PREDICTED: nuclear transcription factor Y subunit A-9 isoform X3
RefseqXP_010544190.10.0PREDICTED: nuclear transcription factor Y subunit A-9 isoform X3
RefseqXP_010544191.10.0PREDICTED: nuclear transcription factor Y subunit A-9 isoform X3
RefseqXP_010544192.10.0PREDICTED: nuclear transcription factor Y subunit A-9 isoform X4
SwissprotQ945M94e-97NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLV4NMV51e-102V4NMV5_EUTSA; Uncharacterized protein
STRINGXP_010544186.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.15e-93nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]