PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010544189.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NF-YA

Protein Properties

Length: 297aa MW: 32493 Da PI: 8.3267

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010544189.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	105.3	5.1e-33	186	242	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+I++RRq+Rak+e ekkl +ksrkpylheSRh+hA+rRpRgsgGrF XP_010544189.1 186 QEPVYVNAKQYQAIVRRRQARAKAELEKKL-IKSRKPYLHESRHQHAMRRPRGSGGRF 242 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.2E-35	184	245	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.521	185	245	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.1E-28	187	242	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	6.7E-24	188	210	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	6.7E-24	219	242	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010262	Biological Process	somatic embryogenesis
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0055046	Biological Process	microgametogenesis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MGIGDMQSKS ESGNQVVVSD VHPVSSSSII SSEPWWRAVG YNANSFVEAG EKGENSGKLS 60 VSENQNTFES NGAKLPPNNA GVDRGDHSHK ESHVTASSQS GGEYTADNQE LTHLLSVIPA 120 AASDECLTQP PQLELIGHSV ACASWKQFQD PYYGGMMGSC GHQPLGFVSY GEMPHTRMPL 180 PPEVAQEPVY VNAKQYQAIV RRRQARAKAE LEKKLIKSRK PYLHESRHQH AMRRPRGSGG 240 RFAKKTEEKG NADDTSYSPV HQGSAYKRRE EGDCLGQQLN SMSSTANRPS QTRLAIK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-18	186	242	2	58	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010544189.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010544189.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-9 isoform X3
Refseq	XP_010544190.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-9 isoform X3
Refseq	XP_010544191.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-9 isoform X3
Swissprot	Q945M9	1e-100	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	V4NMV5	1e-102	V4NMV5_EUTSA; Uncharacterized protein
STRING	XP_010544186.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	3e-96	nuclear factor Y, subunit A9

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]