PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544186.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YA
Protein Properties Length: 343aa    MW: 38083.5 Da    PI: 9.5591
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544186.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1056.4e-33232288158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQyq+I++RRq+Rak+e ekkl +ksrkpylheSRh+hA+rRpRgsgGrF
  XP_010544186.1 232 QEPVYVNAKQYQAIVRRRQARAKAELEKKL-IKSRKPYLHESRHQHAMRRPRGSGGRF 288
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-35230291IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.521231291IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-28233288IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.6E-24234256IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.6E-24265288IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MWRNMALRWA TRESKNEFEL IPPRKRNQKK NRADASDCFV FLKLKSQGIG DMQSKSESGN  60
QVVVSDVHPV SSSSIISSEP WWRAVGYNAN SFVEAGEKGE NSGKLSVSEN QNTFESNGAK  120
LPPNNAGVDR GDHSHKESHV TASSQSGGEY TADNQELTHL LSVIPAAASD ECLTQPPQLE  180
LIGHSVACAS WKQFQDPYYG GMMGSCGHQP LGFVSYGEMP HTRMPLPPEV AQEPVYVNAK  240
QYQAIVRRRQ ARAKAELEKK LIKSRKPYLH ESRHQHAMRR PRGSGGRFAK KTEEKGNADD  300
TSYSPVHQGS AYKRREEGDC LGQQLNSMSS TANRPSQTRL AIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-18232288258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544186.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544186.10.0PREDICTED: nuclear transcription factor Y subunit A-9 isoform X1
SwissprotQ945M99e-99NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLV4NMV51e-101V4NMV5_EUTSA; Uncharacterized protein
STRINGXP_010544186.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132681829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.11e-94nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]