PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543982.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 350aa    MW: 39868.6 Da    PI: 6.728
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543982.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.31.2e-201461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++lv++v+++G g+W+t ++  g++R++k+c++rw +yl
   XP_010543982.1 14 RGPWTPEEDQKLVEYVRKHGHGNWRTLPEFAGLNRCGKSCRLRWANYL 61
                     89********************************************97 PP

2Myb_DNA-binding544e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eE++ +++++  lG++ W+ Ia++++ gRt++++k++w++
   XP_010543982.1  67 RGKFSPEEEQTILHLHSILGNK-WSNIAKHLP-GRTDNEIKNFWNT 110
                      89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-27564IPR009057Homeodomain-like
PROSITE profilePS5129419.982961IPR017930Myb domain
SuperFamilySSF466893.87E-3311108IPR009057Homeodomain-like
SMARTSM007171.4E-161363IPR001005SANT/Myb domain
PfamPF002498.2E-191461IPR001005SANT/Myb domain
CDDcd001671.64E-131661No hitNo description
PROSITE profilePS5129427.55962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-2765117IPR009057Homeodomain-like
SMARTSM007174.6E-1666114IPR001005SANT/Myb domain
PfamPF002494.7E-1667110IPR001005SANT/Myb domain
CDDcd001671.22E-1269110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MVRPPCCDGN GVKRGPWTPE EDQKLVEYVR KHGHGNWRTL PEFAGLNRCG KSCRLRWANY  60
LKPDIKRGKF SPEEEQTILH LHSILGNKWS NIAKHLPGRT DNEIKNFWNT QMKKKLIQMG  120
IDPVTHRPRS DLFASLPQLI ALANLKDLIE QNSYSSIQAE AAQLMKIHLQ CLLQSAASLN  180
GNGPNNILDI DHNHAMNLLN STVSPNEDLN PNPNPTRDEF KDQNQCSFSL GTVTNPTTPS  240
LQQQYPLDNN SPTERSRADP LLLPSSLNSE YHHLMDRMDL SFDDMAKQPS LRHDDDDHHP  300
QHHQHHYPSS WVLATTSLPH NMNDTTITGV ALPYWPDFCF DDNQSTTFLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543982.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543982.10.0PREDICTED: protein ODORANT1
SwissprotQ9S9Z21e-132MYB93_ARATH; Transcription factor MYB93
TrEMBLD7KK811e-131D7KK81_ARALL; AtMYB93
STRINGXP_010543982.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-133myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]