PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010543982.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 350aa MW: 39868.6 Da PI: 6.728 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 65.3 | 1.2e-20 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++lv++v+++G g+W+t ++ g++R++k+c++rw +yl XP_010543982.1 14 RGPWTPEEDQKLVEYVRKHGHGNWRTLPEFAGLNRCGKSCRLRWANYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54 | 4e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE++ +++++ lG++ W+ Ia++++ gRt++++k++w++ XP_010543982.1 67 RGKFSPEEEQTILHLHSILGNK-WSNIAKHLP-GRTDNEIKNFWNT 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-27 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.982 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.87E-33 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-19 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.64E-13 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.559 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-16 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-12 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MVRPPCCDGN GVKRGPWTPE EDQKLVEYVR KHGHGNWRTL PEFAGLNRCG KSCRLRWANY 60 LKPDIKRGKF SPEEEQTILH LHSILGNKWS NIAKHLPGRT DNEIKNFWNT QMKKKLIQMG 120 IDPVTHRPRS DLFASLPQLI ALANLKDLIE QNSYSSIQAE AAQLMKIHLQ CLLQSAASLN 180 GNGPNNILDI DHNHAMNLLN STVSPNEDLN PNPNPTRDEF KDQNQCSFSL GTVTNPTTPS 240 LQQQYPLDNN SPTERSRADP LLLPSSLNSE YHHLMDRMDL SFDDMAKQPS LRHDDDDHHP 300 QHHQHHYPSS WVLATTSLPH NMNDTTITGV ALPYWPDFCF DDNQSTTFLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010543982.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010543982.1 | 0.0 | PREDICTED: protein ODORANT1 | ||||
Swissprot | Q9S9Z2 | 1e-132 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | D7KK81 | 1e-131 | D7KK81_ARALL; AtMYB93 | ||||
STRING | XP_010543982.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 1e-133 | myb domain protein 93 |
Publications ? help Back to Top | |||
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