PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010543925.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | B3 | ||||||||
Protein Properties | Length: 182aa MW: 20411.3 Da PI: 6.8778 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 96.9 | 1.3e-30 | 70 | 173 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT.................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f+k ltpsdv+k++rlv+pk++ae++ + e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD XP_010543925.1 70 FEKSLTPSDVGKLNRLVIPKQHAEKYfplngsssavsgggcdgDTAAEKGMLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGD 164 99****************************99999999999875556699********************************************* PP EEEEEE-SS CS B3 79 fvvFkldgr 87 +v F+++++ XP_010543925.1 165 VVFFQRHRS 173 *****7654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.4E-38 | 61 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.66E-28 | 69 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.87E-27 | 69 | 175 | No hit | No description |
SMART | SM01019 | 1.7E-21 | 70 | 179 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.338 | 70 | 182 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-27 | 70 | 173 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MSSVNHYSRD VNHSTTLWWQ HQRQNDAIPP PPETAASTWW RNQPQNDVVP SSQNDPSTCT 60 SDHHQLESLF EKSLTPSDVG KLNRLVIPKQ HAEKYFPLNG SSSAVSGGGC DGDTAAEKGM 120 LLSFEDESGK CWRFRYSYWN SSQSYVLTKG WSRYVKEKQL DAGDVVFFQR HRSAGGDATA 180 VS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 7e-45 | 67 | 170 | 5 | 95 | B3 domain-containing transcription factor NGA1 |
5os9_B | 7e-45 | 67 | 170 | 5 | 95 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010543925.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010543925.1 | 1e-135 | PREDICTED: B3 domain-containing protein At5g06250-like, partial | ||||
Swissprot | Q9FNI3 | 3e-57 | Y5625_ARATH; B3 domain-containing protein At5g06250 | ||||
TrEMBL | V4KRK1 | 4e-62 | V4KRK1_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_010543925.1 | 1e-135 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11580.2 | 4e-60 | B3 family protein |