PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010543859.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | NF-YA | ||||||||
Protein Properties | Length: 261aa MW: 28643.5 Da PI: 10.114 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 90.1 | 3e-28 | 114 | 171 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RRq Rak+ e+k + s++py h SRh hA+rRpRgsgGrF XP_010543859.1 114 DGPIYVNAKQYHGIIRRRQFRAKAILENKAAKCSKQPYKHYSRHLHAMRRPRGSGGRF 171 57****************************9**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.9E-28 | 112 | 174 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 33.649 | 113 | 174 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.9E-20 | 116 | 138 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.8E-24 | 116 | 171 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.9E-20 | 148 | 171 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MAMQTVYLKG REGIAGNTPV GQLLSAPQTT WWNVLGSQPL PLATDRGAVR EPEQGMNKQN 60 SATQFTLSTG DGKNSRDVLK SQGCFTTQSA CFEFGFAQPP QGRMMLPLNM ETEDGPIYVN 120 AKQYHGIIRR RQFRAKAILE NKAAKCSKQP YKHYSRHLHA MRRPRGSGGR FLNTKAMMNK 180 ERDEAKQPQP SNSQNSEVVH PENGTMNSLR DGKGSGVSGS EATSMDCFLG SSVHSHSGMV 240 MPSKWVAAVA AMDNGCCNLR F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 5e-14 | 114 | 172 | 2 | 60 | HAPB protein |
4g92_A | 5e-14 | 114 | 172 | 2 | 60 | HAPB protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010543859.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010543859.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1 | ||||
Refseq | XP_010543860.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1 | ||||
Refseq | XP_010543861.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1 | ||||
Swissprot | Q9M9X4 | 4e-89 | NFYA2_ARATH; Nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | V4LDW7 | 2e-89 | V4LDW7_EUTSA; Uncharacterized protein | ||||
STRING | XP_010543859.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05690.1 | 2e-91 | nuclear factor Y, subunit A2 |
Publications ? help Back to Top | |||
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