PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543827.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 275aa    MW: 31752.2 Da    PI: 5.0623
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543827.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1973126356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+eq+++Le+ F+ ++++  e++++LA++lgL  rqV++WFqNrRa++k
  XP_010543827.1  73 KKRRLTAEQVKALENNFAVENKLEPERKARLAEELGLHPRQVSIWFQNRRARWK 126
                     56689************************************************9 PP
2HD-ZIP_I/II126.71e-4072164193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl++eqvk+LE++F  e+kLeperK++la+eLgl+prqv +WFqnrRAR+ktkqlEkdy +Lk+ ydalk + ++L++e ++L+++l+e
  XP_010543827.1  72 EKKRRLTAEQVKALENNFAVENKLEPERKARLAEELGLHPRQVSIWFQNRRARWKTKQLEKDYGVLKADYDALKLDYSNLQQERQALTSKLEE 164
                     69**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.68668128IPR001356Homeobox domain
SMARTSM003896.8E-1971132IPR001356Homeobox domain
SuperFamilySSF466891.15E-1972139IPR009057Homeodomain-like
CDDcd000863.94E-1573129No hitNo description
PfamPF000465.8E-1773126IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-2074134IPR009057Homeodomain-like
PRINTSPR000315.4E-699108IPR000047Helix-turn-helix motif
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
PRINTSPR000315.4E-6108124IPR000047Helix-turn-helix motif
PfamPF021832.3E-15128168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MKQFGSSDSL HPLFSISQPQ ESSVSHKHKY TVAEHMSSTD LRGYSEEFQT MLDDLVEEDA  60
LLEETLKNTA SEKKRRLTAE QVKALENNFA VENKLEPERK ARLAEELGLH PRQVSIWFQN  120
RRARWKTKQL EKDYGVLKAD YDALKLDYSN LQQERQALTS KLEELRAKFR EETKEEENKS  180
PTGQNREHRE EEDKLQIPII SPSSSSSLAY LNGSYSTSSS RSTAENFLLI GNYSTTMELQ  240
RVKLEEQCSI FSAEEPCNFF SVDHAPTLQW YIDGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197103ERKARLA
2120128RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543827.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543827.10.0PREDICTED: homeobox-leucine zipper protein ATHB-16-like
TrEMBLA0A1R3K2I63e-76A0A1R3K2I6_9ROSI; Uncharacterized protein
STRINGXP_010543827.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.11e-45homeobox protein 5