PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010543775.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | LBD | ||||||||
Protein Properties | Length: 205aa MW: 23189.3 Da PI: 5.9968 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.1 | 7.2e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC++dCv+apyf +q +++f +vhk+FGasnv+kll +lp ++r++a+ ++ +eA ar+rdPvyG+v++i++lqqq+++l++e+ XP_010543775.1 7 SCGACKFLRRKCSNDCVFAPYFSYDQaSAHFSAVHKVFGASNVSKLLLHLPVQNRSAAAITISFEALARMRDPVYGCVSHIFALQQQVMSLQEEI 101 6***********************99789****************************************************************** PP DUF260 95 allkee 100 +ll+++ XP_010543775.1 102 ELLGTQ 107 998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.791 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-36 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MTGTGSSCGA CKFLRRKCSN DCVFAPYFSY DQASAHFSAV HKVFGASNVS KLLLHLPVQN 60 RSAAAITISF EALARMRDPV YGCVSHIFAL QQQVMSLQEE IELLGTQMAN FGYCQVPTYQ 120 SNKTQQQLMS QLQPVTMQDL HNQTEEAINF TSFGDQFMYG QLGENCLHHD QFFIADPQVL 180 VNHHPWLLNM DYYTTLMDVE NPAWN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-34 | 3 | 112 | 7 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-34 | 3 | 112 | 7 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010543775.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010543775.1 | 1e-155 | PREDICTED: LOB domain-containing protein 33 | ||||
Swissprot | Q9LHS8 | 1e-69 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | D7LZ36 | 2e-69 | D7LZ36_ARALL; Predicted protein | ||||
STRING | XP_010543775.1 | 1e-154 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 6e-72 | LOB domain-containing protein 33 |
Publications ? help Back to Top | |||
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