PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010543617.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 230aa MW: 26387 Da PI: 7.9129 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.3 | 2.3e-10 | 100 | 144 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W++ E++l++ + +++G g+W++I+r + ++t+ q+ s+ qky XP_010543617.1 100 VWSAYEHKLFLIGLQRYGRGDWRSISRNVVMTKTPLQIASHAQKY 144 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.031 | 1 | 51 | IPR017877 | Myb-like domain |
SMART | SM00717 | 47 | 2 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.72E-5 | 4 | 50 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.951 | 93 | 149 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.98E-13 | 95 | 149 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-6 | 97 | 147 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.6E-13 | 99 | 148 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.3E-6 | 100 | 143 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.4E-9 | 100 | 144 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.36E-6 | 101 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MAANPWTRAE DQVLEEGLAT FAGFLPDRLQ RIAEILQRPF WDVYVHYSTL ALDAPEIASG 60 RVNTPGYDDV RSEIPVSQVS ETAEPAKAHG AGRKRRESKV WSAYEHKLFL IGLQRYGRGD 120 WRSISRNVVM TKTPLQIASH AQKYFIRQEL PPERKRRSIH DDNTVDMDLV AKLFPQWLDA 180 FQPQPQPQVL QPLPLLSMNQ QFMLVQGHAQ LPPRDYQSLG QFPGDLDFRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010543617.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010543617.1 | 1e-170 | PREDICTED: transcription factor DIVARICATA-like isoform X3 | ||||
Refseq | XP_010543618.1 | 1e-170 | PREDICTED: transcription factor DIVARICATA-like isoform X3 | ||||
TrEMBL | A0A078FMH6 | 1e-47 | A0A078FMH6_BRANA; BnaC02g02590D protein | ||||
TrEMBL | A0A0D3AHT3 | 1e-47 | A0A0D3AHT3_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6D0S3 | 1e-47 | A0A3P6D0S3_BRAOL; Uncharacterized protein | ||||
STRING | XP_010520203.1 | 2e-82 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 6e-47 | MYB family protein |