PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543479.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 451aa    MW: 50478.2 Da    PI: 6.2614
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543479.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix667.8e-211592252586
        trihelix  25 k....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                          +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ +++++++
  XP_010543479.1 159 GggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQSLLESMD 225
                     044559*********************************************559********99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-17160250No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MESNGLSSVM FSGFSPGMLS LEMPQNPQNP QNPIQFQHPQ MVSYAGNNGG GGDQQHHNHH  60
QTQPPMKTPQ YPYASKHKQL SPLSDEDDPG SGSVSGYNPE DSTGADGKRK FSPWQRMKWT  120
DTIFFGGGIF LGDEAGSSET ADAAKKKPSS SAASTSSGGG GLLQKKGKWK SVSRAMMEKG  180
FYVSPQQCED KFNDLNKRYK RVNDILGKGT ACRVVENQSL LESMDLPPKL KEEAKKLLNS  240
KHLFFREMCA YHNSCGHLTH TNANAIAAAD QPQTQTQSHP QPQQSCFHSA AAGDSSKMTR  300
IAENGEEEEE ESDTAEDSDT EDDSDEEGEE EEVVAGKRQR KMSETGAVRG LMEEVGRVAM  360
DMAKGAREKK EWMKKKMVEL EERRVGFEWE ALEMEKQSLK WMRFKSKKER EMEKARLDNQ  420
RRRLENERML LLLRRKEMEF DTSASASASV V
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543479.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543479.10.0PREDICTED: trihelix transcription factor GTL1 isoform X2
RefseqXP_010543480.10.0PREDICTED: trihelix transcription factor GTL1 isoform X1
TrEMBLA0A384KQJ01e-155A0A384KQJ0_ARATH; Uncharacterized protein
TrEMBLQ8RWY51e-155Q8RWY5_ARATH; Sequence-specific DNA binding transcription factor
TrEMBLR0HSJ61e-155R0HSJ6_9BRAS; Uncharacterized protein
STRINGXP_010543481.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-95sequence-specific DNA binding transcription factors