PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543472.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 531aa    MW: 56974.8 Da    PI: 7.9514
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.45.1e-20148234186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W +  + +L++a++e+ ++l+rg+l++ +We+v+++++erg   ++s +qCk+k++nl+kryk ++++++++   s s++p+f+++e
  XP_010543472.1 148 EWGDAAIACLLDAYSEKFTQLNRGNLRGRDWEDVAAAVSERGEkqSKSVEQCKNKIDNLKKRYKLERHRMSSG-GISASHWPWFKKME 234
                     5*************************************99887336799***********************9.566679*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-22146236No hitNo description
Gene3DG3DSA:3.40.1160.107.2E-66276522IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.18E-52289522IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.27E-110291523No hitNo description
PfamPF006961.0E-21292502IPR001048Aspartate/glutamate/uridylate kinase
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MTSLSLATTR QTLATTNTMV LPAPPYAPSR RLASSKPANQ IDAPQQHQGN GDDDVVVETS  60
SAFHGVDPFS ADESSNPYDT SAAADGGDGD PNANRSRIGG VRVEKRQNLE ELSDGGTGNG  120
GETTPYGSFK RPRTSSSSAG EYRKDREEWG DAAIACLLDA YSEKFTQLNR GNLRGRDWED  180
VAAAVSERGE KQSKSVEQCK NKIDNLKKRY KLERHRMSSG GISASHWPWF KKMEEIVGNS  240
LSSKGASDDD RAVSSSGNAA KLSRRYAMIT YSPGAQINNA KSKSMSNPRW RRVVLKISGA  300
ALACTGPNNI DPKVVMLIAR EVAIACRLGV EVAVVVGSRN LFCSDTWISS NGLDRTTAYH  360
ISMMASVMNC ILLQSSLEKM GVQARLQTGL SVQGVGEVYN RQRAIRHLEK GRVVIFGGIG  420
ATLGNPLLSS DAAASLRAIE INAEAIVKGT NVDGVYDCHS QDSNVTFDHI SFQELASRGV  480
ASVDAMALNF CEENGIPVVV FNFIEPGNIS KALCGEQVGT LVDRSGRVSA A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A3e-562825221239Uridylate kinase
3ek5_B3e-562825221239Uridylate kinase
3ek5_C3e-562825221239Uridylate kinase
3ek5_D3e-562825221239Uridylate kinase
3ek5_E3e-562825221239Uridylate kinase
3ek5_F3e-562825221239Uridylate kinase
3ek6_A3e-562825221239Uridylate kinase
3ek6_B3e-562825221239Uridylate kinase
3ek6_C3e-562825221239Uridylate kinase
3ek6_D3e-562825221239Uridylate kinase
3ek6_E3e-562825221239Uridylate kinase
3ek6_F3e-562825221239Uridylate kinase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543472.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543472.20.0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104816377
TrEMBLV4NR260.0V4NR26_EUTSA; Uncharacterized protein
STRINGXP_010543472.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein