PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010543470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C2H2 | ||||||||
Protein Properties | Length: 286aa MW: 31302.1 Da PI: 4.4268 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 259 | 282 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++sF++ L++H + H XP_010543470.1 259 HQCSSCKRSFTSEVGLQSHTKAkH 282 79*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.097 | 259 | 286 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 261 | 282 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MEFWGVECKP GACVSVEPGS DMIVHISQAA LGESKNKGDE PIYLYLVVDD VKYTIGTLFQ 60 GKCPQLSSEI LLEKGFELSH SWKHGSVYFT GYKVDAREDD EEEEGSDDEL PVVSEKEKPK 120 PDAVEVKPEV KKTDPAKSGT KQVNFKVPNE EDNAMQDDDD SDEDSDDDMS SSEDSSDDED 180 KKAIAGGDGD EDSDGDETSA DETPKKTEQQ SKKRPADVPK TPAPAYSEKK AKFATPQKTG 240 YVHEATPHPA KQKQKTANHQ CSSCKRSFTS EVGLQSHTKA KHAPPA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010543470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010543470.1 | 0.0 | PREDICTED: histone deacetylase HDT3 isoform X2 | ||||
TrEMBL | R0GWD3 | 7e-67 | R0GWD3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010543469.1 | 1e-167 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 3e-55 | histone deacetylase 2C |