PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543467.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 397aa    MW: 41258.4 Da    PI: 8.0972
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543467.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.94.3e-3970195289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 
                     +g k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a  + ++s +ss+ + s++        
  XP_010543467.1  70 TGVKRPSKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPA--TLNVSLRSSGTTISAPpsksapls 162
                     67799***********************************************************88888..333333333332222222223344 PP

             TCP  89 ................................k 89 
                                                     +
  XP_010543467.1 163 fhssaalslydgdpsrkfigraqnaavygfhhN 195
                     444445555555555556654433333333331 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-3576214IPR005333Transcription factor, TCP
PROSITE profilePS5136928.46576130IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MESHQDKNNN NQSNTDHHHH HHDHHQHHHL QSTSVQPVPF MSSISGPITT AAAAGSNANA  60
NTAVVPAAKT GVKRPSKDRH TKVDGRGRRI RMPAICAARV FQLTRELGHK SDGETIEWLL  120
QQAEPAIIAA TGTGTIPATL NVSLRSSGTT ISAPPSKSAP LSFHSSAALS LYDGDPSRKF  180
IGRAQNAAVY GFHHNHHQLY QNPTDSSSTT SSSSSLTKHF REEDLFKESN TEPGGSGSPK  240
PDQEPGSARS ATQSMIPPAP MWAVAAPATT NGGSAFWMLP VGGGGGGAGM AEPPPSMWAF  300
NPGHYSGGGR VGSVSLGSMM VQQAVGGGHQ QIGLGVVESN MGVLTGGGGV AGGYGGGGRV  360
GLGMSLEQQA PPPHHQLQGE NQRQARDSGD ENPTGSQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543467.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543467.10.0PREDICTED: transcription factor TCP23
SwissprotQ9LQF01e-103TCP23_ARATH; Transcription factor TCP23
TrEMBLA0A087FX521e-120A0A087FX52_ARAAL; Uncharacterized protein
STRINGXP_010543467.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.12e-68TCP family protein