PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543461.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 611aa    MW: 68356.1 Da    PI: 6.7292
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543461.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.74.2e-30138223187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  XP_010543461.1 138 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMsEEHGYHRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 223
                     8*************************************999*****************************98..55667*******85 PP
2trihelix63.83.9e-20447532282
        trihelix   2 WtkqevlaLiearremeerlrr....gklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                     Wtk e+++L+e+r++me+ +++    g++++ lWeevs+k+++ gf +rs+ +Ckekwe++n+  +k++e+ +k+++e+ss+c  +
  XP_010543461.1 447 WTKAEIKKLMEIRTSMESGFQQvtagGCSDEFLWEEVSAKLSHLGFdQRSALMCKEKWEWINNCTRKENEQLNKKRKENSSNCGVY 532
                     *********************8666679******************999**************************99999999654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0038135198IPR001005SANT/Myb domain
PROSITE profilePS500906.992137196IPR017877Myb-like domain
CDDcd122033.11E-19138203No hitNo description
PfamPF138378.0E-21138224No hitNo description
SMARTSM0071715443510IPR001005SANT/Myb domain
PROSITE profilePS500906.202447505IPR017877Myb-like domain
CDDcd122033.31E-18447513No hitNo description
PfamPF138375.1E-12447529No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MEGHHHHHPH YSIPELRQLM KGGSGGGGGR LESSSPSSHF PVAAAAAMIP SEHFGFNLAP  60
HHPHHRLHQF GDQEMGFVPL GIHGLCTDSS AAAASNASNA ATVNTNLANT SGGGGFGGFL  120
DGGDGGGFGG GDGGGSGRWP RQETLTLLEI RSRLDHKFKE ANQKGPLWDE VSRIMSEEHG  180
YHRSGKKCRE KFENLYKYYK KTKEGKAGRQ DGKHYRFFRQ LEALYGDPNN SVSLPETQFT  240
GNNALNHNFH PPSSSMNTNP ANINNPEAVI SSLYPLHQKL STDNSLSLSN NYNSSELETS  300
SSDDNGNDST RRKRRGWRAK IKEFVDMQMK RLMERQEAWL EKLTKTIEDK EQQRMVTEEE  360
WRRLEAARID KEHSFWARER ERMEARDVAL IEALQCLTGR PLRKAACSSP EERDHGNEIQ  420
NHSENQNENG SDQTTTNNVC LKGDVGWTKA EIKKLMEIRT SMESGFQQVT AGGCSDEFLW  480
EEVSAKLSHL GFDQRSALMC KEKWEWINNC TRKENEQLNK KRKENSSNCG VYFPTTEEDP  540
MYNSHGSGYN NNRTTDHDQN RINGDSSPSN SNVGNPDGAI AGNVCFPFFM GDGDQNLWES  600
YGVRLSKGEN Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12029KGGSGGGGGR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543461.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543461.10.0PREDICTED: trihelix transcription factor PTL
SwissprotQ9LZS00.0PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A087G4N00.0A0A087G4N0_ARAAL; Uncharacterized protein
STRINGXP_010543461.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.10.0Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]