PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543427.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family E2F/DP
Protein Properties Length: 357aa    MW: 38917.3 Da    PI: 6.8104
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543427.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.31.2e-27101183271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  XP_010543427.1 101 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfgdpgntgtspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 183
                     689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094048.9E-1331356IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.105.3E-4696189IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.0E-33100183IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.2E-25102183IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.04E-21103184IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144584.78E-42188291IPR014889Transcription factor DP, C-terminal
SMARTSM011382.6E-60190355IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.97E-41190298No hitNo description
PfamPF087812.2E-40191296IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MTSGSNSNQN HQEDGGAMNN NNNPGTRSWG TGASGQSVST SGSVGSPSSR SELVTMATPA  60
SDSTFLRLNN LDIQGDDAGS QGAVGGKKKK RGQRAVGPDK SGRGLRQFSM KVCEKVESKG  120
RTTYNEVADE LVAEFGDPGN TGTSPDQQQY DEKNIRRRVY DALNVLMAMD IISKDKKEIQ  180
WKGLPRTSIS DIEELKNERL TLRNRIDKKA AYLQELEEQY VGLQSLIRRN EQLYSSGNAP  240
SGGVALPFIL VQTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDNFVLKS MKFNERPPPS  300
NDQMAHNVPS ENAIQGHGSI PQPQIIPTPR ANAASTSTSS PPLIPGIIKA ARVKPEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B8e-3794188193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543427.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543427.10.0PREDICTED: transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-179DPB_ARATH; Transcription factor-like protein DPB
TrEMBLD7LWN70.0D7LWN7_ARALL; Uncharacterized protein
STRINGXP_010543412.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-161Transcription factor DP