PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543399.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARF
Protein Properties Length: 676aa    MW: 74479.8 Da    PI: 7.8385
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.6e-23126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF +  + 
  XP_010543399.1 126 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLMAGDSIVFLR--TA 216
                     89****************************997556555..89***********************************************4..46 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  XP_010543399.1 217 NGDLCVGIRRA 227
                     7778****996 PP

2Auxin_resp105.94.7e-35294374483
      Auxin_resp   4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+++++FevvY+Prast+eF+vk+  v++a+ +++++G Rfkmafetedss++++ +Gtv++ + +dp+rWpnS+Wr+L+
  XP_010543399.1 294 LAASGNAFEVVYYPRASTPEFCVKAGAVRRAMGIRWCPGLRFKMAFETEDSSRISWfMGTVSSAHPADPIRWPNSPWRLLQ 374
                     68899**************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-36122239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-29123254IPR015300DNA-binding pseudobarrel domain
CDDcd100173.15E-21125226No hitNo description
SMARTSM010196.1E-20126228IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112126228IPR003340B3 DNA binding domain
PfamPF023622.7E-21126227IPR003340B3 DNA binding domain
PfamPF065072.4E-30292374IPR010525Auxin response factor
PROSITE profilePS5174520.126590670IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MLALMESNGK KAKDCKEDKS LDSQLWHACA GGMVKMPPVN SKVLYFPQGH SEHASAAVNL  60
PNCPRIPPLI LCQVTSMKFL ADPETDEVYA KIGLVPVASG LGFDEEEDGL GSDEGEGGNA  120
KQPASFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYTAD PPVQTILAKD VHGETWKFRH  180
IYRGTPRRHL LTTGWSTFVN HKKLMAGDSI VFLRTANGDL CVGIRRAKRG ISPDGSEMLS  240
PGWGSGPDSY FSAFMREAEE GKLMRRRRSN GSENGRTNRS GRVRAESVVE ASVLAASGNA  300
FEVVYYPRAS TPEFCVKAGA VRRAMGIRWC PGLRFKMAFE TEDSSRISWF MGTVSSAHPA  360
DPIRWPNSPW RLLQVAWDEP ELLQNVKRVS PWLVELVSNM PGALHFSPFL PPQKKPRLLL  420
QPPEFPLNTA QFPVPKFSSN LFGSRNFLRC LPDNNNSDKN INIPAGMQGA RHARFDLSRT  480
DLHLHKQTLS GDPSILLPTR TTSLMGLSDN GVSCFLTMAY NNYPTAKKTI TTPQLVLFGR  540
PILTEQEISL GGSCGSMTLK DSSSDKNLDR TAKLLSLVEL EEPEMTSLET GQCKVFMESE  600
DVGRTLDLPL LGSYDALREN LRRMFGIEHP DTLNSLVYCD ISGSVKPVGD EPYSEFARTA  660
RRLTIPVDSG NGREGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-842139551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543399.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543398.10.0PREDICTED: auxin response factor 18-like
RefseqXP_010543399.10.0PREDICTED: auxin response factor 18-like
RefseqXP_010543400.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A067JYZ20.0A0A067JYZ2_JATCU; Auxin response factor
STRINGXP_010543398.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]