PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010543398.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ARF | ||||||||
Protein Properties | Length: 676aa MW: 74479.8 Da PI: 7.8385 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73 | 3.6e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + + XP_010543398.1 126 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLMAGDSIVFLR--TA 216 89****************************997556555..89***********************************************4..46 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_010543398.1 217 NGDLCVGIRRA 227 7778****996 PP | |||||||
2 | Auxin_resp | 105.9 | 4.7e-35 | 294 | 374 | 4 | 83 |
Auxin_resp 4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+++++FevvY+Prast+eF+vk+ v++a+ +++++G Rfkmafetedss++++ +Gtv++ + +dp+rWpnS+Wr+L+ XP_010543398.1 294 LAASGNAFEVVYYPRASTPEFCVKAGAVRRAMGIRWCPGLRFKMAFETEDSSRISWfMGTVSSAHPADPIRWPNSPWRLLQ 374 68899**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-36 | 122 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-29 | 123 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.15E-21 | 125 | 226 | No hit | No description |
SMART | SM01019 | 6.1E-20 | 126 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.112 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-21 | 126 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.4E-30 | 292 | 374 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 20.126 | 590 | 670 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MLALMESNGK KAKDCKEDKS LDSQLWHACA GGMVKMPPVN SKVLYFPQGH SEHASAAVNL 60 PNCPRIPPLI LCQVTSMKFL ADPETDEVYA KIGLVPVASG LGFDEEEDGL GSDEGEGGNA 120 KQPASFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYTAD PPVQTILAKD VHGETWKFRH 180 IYRGTPRRHL LTTGWSTFVN HKKLMAGDSI VFLRTANGDL CVGIRRAKRG ISPDGSEMLS 240 PGWGSGPDSY FSAFMREAEE GKLMRRRRSN GSENGRTNRS GRVRAESVVE ASVLAASGNA 300 FEVVYYPRAS TPEFCVKAGA VRRAMGIRWC PGLRFKMAFE TEDSSRISWF MGTVSSAHPA 360 DPIRWPNSPW RLLQVAWDEP ELLQNVKRVS PWLVELVSNM PGALHFSPFL PPQKKPRLLL 420 QPPEFPLNTA QFPVPKFSSN LFGSRNFLRC LPDNNNSDKN INIPAGMQGA RHARFDLSRT 480 DLHLHKQTLS GDPSILLPTR TTSLMGLSDN GVSCFLTMAY NNYPTAKKTI TTPQLVLFGR 540 PILTEQEISL GGSCGSMTLK DSSSDKNLDR TAKLLSLVEL EEPEMTSLET GQCKVFMESE 600 DVGRTLDLPL LGSYDALREN LRRMFGIEHP DTLNSLVYCD ISGSVKPVGD EPYSEFARTA 660 RRLTIPVDSG NGREGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 8e-84 | 21 | 395 | 51 | 388 | Auxin response factor 5 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010543398.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010543398.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Refseq | XP_010543399.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Refseq | XP_010543400.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A067JYZ2 | 0.0 | A0A067JYZ2_JATCU; Auxin response factor | ||||
STRING | XP_010543398.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Publications ? help Back to Top | |||
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