PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543227.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 290aa    MW: 32597.4 Da    PI: 8.4562
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543227.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-0958105346
                      SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqk 46 
                       WT+eEd+ + +a + +  +     +W +Ia+ ++ g+t  +++ r+  
   XP_010543227.1  58 VWTPEEDKCFEKALAFYDDKddypdRWLKIAAAVP-GKTVADVIRRYKE 105
                      5*****************99***************.**********975 PP
2Myb_DNA-binding47.73.5e-15170214347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
   XP_010543227.1 170 PWTEEEHRRFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 214
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-548105IPR009057Homeodomain-like
PROSITE profilePS512937.15554109IPR017884SANT domain
SMARTSM007171.4E-855109IPR001005SANT/Myb domain
PfamPF002495.6E-858105IPR001005SANT/Myb domain
SuperFamilySSF466891.29E-1058114IPR009057Homeodomain-like
CDDcd001671.91E-859106No hitNo description
PROSITE profilePS5129420.718163219IPR017930Myb domain
SuperFamilySSF466891.52E-17165218IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-18166218IPR006447Myb domain, plants
SMARTSM007174.3E-12167217IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-13168214IPR009057Homeodomain-like
PfamPF002492.7E-12170214IPR001005SANT/Myb domain
CDDcd001671.98E-10170215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
SHIERETDIS VYCFLGLVGK RKGKRRKADM ANRGIEILPP AAQFPATNWL FQETKQTVWT  60
PEEDKCFEKA LAFYDDKDDY PDRWLKIAAA VPGKTVADVI RRYKELEDDV SDIEAGLIPL  120
PGYAASEDGG SCFELQSWRF SGGDFVFGGK RCSSAASLRP TEKERKKGIP WTEEEHRRFL  180
MGLKKYGKGD WRNISRNFVT TRTPTQVASH AQKYFIRQLA GGKDKRRSSI HDITTVNVPD  240
HDHNSYSYSS SAATAADSLD HLFPPQNAGH GFAFASSFGS SCNNAFQPWN
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543227.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543227.20.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H76e-83DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLV4LJX81e-100V4LJX8_EUTSA; Uncharacterized protein
STRINGXP_010543227.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-100MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]