PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543113.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 517aa    MW: 56644.6 Da    PI: 8.0805
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543113.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.6e-12173197226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C ++++t tCk+Gd+CkF H+
  XP_010543113.1 173 GEKDCTHYMQTRTCKFGDSCKFDHP 197
                     7889********************8 PP
2zf-CCCH34.73.1e-11223249127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C++f +t  CkyG+rCkF+H++
  XP_010543113.1 223 PGEPDCPYFVKTQRCKYGSRCKFNHPK 249
                     5789*********************96 PP
3zf-CCCH37.83.1e-12268292327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C f+++tG Ck+G++CkF+H++
  XP_010543113.1 268 EPPCAFYMKTGKCKFGPTCKFHHPK 292
                     79*********************96 PP
4zf-CCCH32.61.4e-10338363126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+f+++tG CkyG +C+++H+
  XP_010543113.1 338 PGEVDCPFYLKTGSCKYGHTCRYNHP 363
                     57899********************9 PP
5zf-CCCH43.36.2e-14418443126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C+++++tG+Ck+G+rCkF+H+
  XP_010543113.1 418 PGQVECDYYMKTGECKFGERCKFHHP 443
                     5789*********************8 PP
6zf-CCCH36.67.7e-12476497627
                     -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                     C+++++tG CkyG++C+F H+p
  XP_010543113.1 476 CPYYMKTGMCKYGATCRFDHPP 497
                     ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.061171199IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-4171198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-5172198IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9173197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4177196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.746222250IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-6222249IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8224249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5227248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4228247IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-6265292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.183265293IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-10268292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6269292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5270291IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5337364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784337365IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-8339363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5341364IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-4343362IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497417445IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-7417444IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6419445IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-11419443IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5423443IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413470498IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6470497IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-6474497IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5476495IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-8476497IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MAHQLYSYAH HTTYAAPSAV SPAPPSQSSL SSLYGAASDA LTEPYLPHST FRYLGRDGSE  60
YLSKYPSSLA SSSLSASTMY HHLANTTASH LGYSQLLQHQ DKWPPGVEVP TASGVEPLPP  120
GVKRTSEALY YPTVLGAHNS IGQTEAWYTT DYLTKRPKLE STSHLPIYPQ RPGEKDCTHY  180
MQTRTCKFGD SCKFDHPIWV PEGGILDWKE APLAPNESYP ERPGEPDCPY FVKTQRCKYG  240
SRCKFNHPKA LTTGTSENPD ALPDRPSEPP CAFYMKTGKC KFGPTCKFHH PKDIQISSFD  300
QENGSSEGLT SDTNAANKPP ITFNPALYHN SKGLPVRPGE VDCPFYLKTG SCKYGHTCRY  360
NHPDRTAFIP PVAGVTYPLV ASTAANLNLG VVTPAASLYQ TLAQPTIGVV PTVYPQRPGQ  420
VECDYYMKTG ECKFGERCKF HHPIDRSAAA TSKQSSQENV KFTLAGYPRR EGAVHCPYYM  480
KTGMCKYGAT CRFDHPPPGE VKGKTASSGG GPEADVQ
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543113.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543113.10.0PREDICTED: zinc finger CCCH domain-containing protein 37-like
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLR0I1T40.0R0I1T4_9BRAS; Uncharacterized protein
STRINGXP_010543113.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)