PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543057.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 437aa    MW: 48549 Da    PI: 6.0243
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543057.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.8e-15240288154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+ +h   Er RR++ N++fe L++l+P++     +K + a+iL +A+eYI++L
  XP_010543057.1 240 RKNKHFTTERERRSHYNDRFEALKKLIPNP-----TKTDRASILGEAIEYIQEL 288
                     6899**************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.84E-15237293No hitNo description
Gene3DG3DSA:4.10.280.104.8E-16237297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.35E-17238306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.818239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-12240288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-12245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MYEESGCFDP HPAAEAAADN AAASHQLPPP LVVAGSTTNS HNSFSSDGLK LPVEDLSAFH  60
HISHDNASVP APVDQIQNQN TNHLIHQMIH DSSFGQSNWD EGPQDFVVDD HQNSGFGMNP  120
SAQLSEHPNP PTPDLLSLLH LPRCSGSVSL LPHSSISLPT SSLSDIMAAS CVTYDPPXPP  180
LIPTNEYSPQ AGFLLGMENQ REAANAGVLY TDGNGTQFDS GILEFTKDIS GCIRKGRGSR  240
KNKHFTTERE RRSHYNDRFE ALKKLIPNPT KTDRASILGE AIEYIQELLR RVSELKYLVE  300
KKRCGNKRQK TEEEDIENPE NKPEIYNSSN SNNSLRCSWL QRRSKVTEVD VRIIDDEVTI  360
KVVQKKKINC LLFVSKVLDQ LQLDLHHVAG GQIGEHYSFL FNTKIYEGST IYASAIASRV  420
IEVVDKQYMS ALPVNNY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543057.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019058306.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH91-like
SwissprotQ8GX461e-156BH091_ARATH; Transcription factor bHLH91
TrEMBLR0HPE81e-160R0HPE8_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010543057.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-148bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]