PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542813.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 332aa    MW: 37347.6 Da    PI: 8.1303
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542813.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.41.9e-3039129186
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                     f kv tpsdv+k++rlv+pk++ae++    ++++++s+ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F+++ g
  XP_010542813.1  39 FNKVVTPSDVGKLNRLVIPKQHAENYfpldSSSSQNSTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRSvG 129
                     89*********************999***966667899*************************************************5523 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-4133148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-2936145IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-2537127No hitNo description
SMARTSM010193.2E-2239145IPR003340B3 DNA binding domain
PfamPF023621.0E-2739130IPR003340B3 DNA binding domain
PROSITE profilePS5086314.55139143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDLSLATKSS DQEQDIDQEI SADNNNMNVP VPVEKEHMFN KVVTPSDVGK LNRLVIPKQH  60
AENYFPLDSS SSQNSTLLNF QDRNGKMWRF RYSYWNSSQS YVMTKGWSRF VKEKKLDAGD  120
IVSFQRSVGT EPAKSRLFID WRHRPDINLV RNPTIPSSSL FLHHHHPYQF GDFNFPTSVH  180
GNRLPEYSVP WGLNFDVRNP HHQYNRQERE IIGYGYGSFV GRCWPSDQRS PCGSEPLVFD  240
SIPVVAGRIT PAVVAELPPP EVAAAGKRLR LFGVNMDCGT DDHHSTSPGR DIVSRGEMGA  300
SSSSSSALRL GRSSTDDDPN ARKGKSLSSF FS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-60331472116B3 domain-containing transcription factor NGA1
5os9_B1e-60331472116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542813.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542813.10.0PREDICTED: B3 domain-containing transcription factor NGA3-like
SwissprotQ9MAN11e-114NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLA0A3P6CE491e-115A0A3P6CE49_BRACM; Uncharacterized protein
STRINGXP_010542813.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139901724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.11e-108B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]