PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010542805.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 714aa MW: 78230.5 Da PI: 6.6798 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.9 | 3e-15 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E+ ++++a +++G W +I +++g ++t+ q++s+ qk+ XP_010542805.1 24 RERWTEDEHSRFLEALRLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.24E-15 | 18 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.323 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 4.8E-17 | 22 | 72 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.0E-11 | 23 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-7 | 24 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-12 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.44E-8 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 714 aa Download sequence Send to blast |
MEKNISGEEL VTKIRKPYTI TKQRERWTED EHSRFLEALR LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFT KQPYAWKAST WMRFAVDASI ELHKKLLEKE AQAKGIPICQ ALDIEIPPPR 120 PKRKPSNPYP RKTGNGESTS QVSSAKVVKL DSSASFSHCN QALDLEKKPF TEKPNGVEKV 180 PNGNGNQDDN CSGVSARPTE AHCSSISSVN KYPFPNKAAP RNPSSFRESE PDLTKATADN 240 GTSKTSNADN SCYSQDNDAN VLPHISISKE DNGVNGLSPV GNMNGIQSYP WHFPVHVLNG 300 NVGTYPQNPP DNVPRSSRQA FPAFHPAFVP ACHTQDDYRS FLQISSTFSN LIMSALLQNP 360 AAHAAATFAA SFWPYGNVGS SNDSSTSTTI QTDGAFPPRQ MSSPPPSMAA ITAATVAAAT 420 AWWAAHGLLP ICAPFTCLPM SAPIVPPSVS AQTELPETDK KDAATANPQQ PAMEQGEAQV 480 LASPFESDDD LDENGRTEQD TGLKTEDHKE KVVEVQEQVQ DSNTTQKKKQ VDRSSCGSNT 540 PSGSDVETDA LEKAAEKDKE EDVKETDGNQ TGTESSTRRT SRSKDNSSDS WKEVSEEGRM 600 AFDALFARER LPQSFSLALD VEKESPEKGK GNREEREREM AHKSKIQDSC SKETASRSEG 660 NGGITIGIGE GKSLRARRTG FKPYKRCSME AKESSSQAEE KVSKRIRLDS KAST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the circadian clock. Binds to the promoter region of APRR1/TOC1 and TCP21/CHE to repress their transcription. Represses both CCA1 and itself. {ECO:0000269|PubMed:12015970, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:9657154}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00654 | PBM | Transfer from LOC_Os08g06110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010542805.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with peak levels occurring around 1 hour after dawn. Up-regulated by APRR1/TOC1 and transiently by light treatment. Down-regulated by APRR5, APRR7 and APRR9. {ECO:0000269|PubMed:12574129, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:19286557, ECO:0000269|PubMed:20233950, ECO:0000269|PubMed:9657154}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010542805.1 | 0.0 | PREDICTED: protein LHY-like isoform X4 | ||||
Swissprot | Q6R0H1 | 1e-179 | LHY_ARATH; Protein LHY | ||||
TrEMBL | E4MW67 | 0.0 | E4MW67_EUTHA; mRNA, clone: RTFL01-03-N03 | ||||
TrEMBL | V4L368 | 0.0 | V4L368_EUTSA; Uncharacterized protein | ||||
STRING | XP_010542800.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.4 | 1e-135 | MYB_related family protein |