PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010542804.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 723aa MW: 78945.1 Da PI: 6.4725 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.9 | 3.1e-15 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E+ ++++a +++G W +I +++g ++t+ q++s+ qk+ XP_010542804.1 24 RERWTEDEHSRFLEALRLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.56E-16 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.989 | 19 | 73 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-7 | 21 | 70 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.9E-17 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.0E-11 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-12 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.47E-8 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 723 aa Download sequence Send to blast |
MEKNISGEEL VTKIRKPYTI TKQRERWTED EHSRFLEALR LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFT KLEKEAQAKG IPICQALDIE IPPPRPKRKP SNPYPRKTGN GESTSQVSSA 120 KVVKLDSSAS FSHCNQALDL EKKPFTEKPN GVEKVPNGNG NQDDNCSGVS ARPTEAHCSS 180 ISSVNKYPFP NKAAPRNPSS FRESEPDLTK ATADNGTSKT SNADNSCYSQ DNDANVLPHI 240 SISKEDNGVN GLSPVGNMNG IQSYPWHFPV HVLNGNVGTY PQNPPGMGFQ DFMFRPVGEV 300 HGHSGLFTIP STSATSQHQD NVPRSSRQAF PAFHPAFVPA CHTQDDYRSF LQISSTFSNL 360 IMSALLQNPA AHAAATFAAS FWPYGNVGSS NDSSTSTTIQ TDGAFPPRQM SSPPPSMAAI 420 TAATVAAATA WWAAHGLLPI CAPFTCLPMS APIVPPSVSA QTELPETDKK DAATANPQQP 480 AMEQGEAQVL ASPFESDDDL DENGRTEQDT GLKTEDHKEK VVEVQEQVQD SNTTQKKKQV 540 DRSSCGSNTP SGSDVETDAL EKAAEKDKEE DVKETDGNQT GTESSTRRTS RSKDNSSDSW 600 KEVSEEGRMA FDALFARERL PQSFSLALDV EKESPEKGKG NREEREREMA HKSKIQDSCS 660 KETASRSEGN GGITIGIGEG KSLRARRTGF KPYKRCSMEA KESSSQAEEK VSKRIRLDSK 720 AST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the circadian clock. Binds to the promoter region of APRR1/TOC1 and TCP21/CHE to repress their transcription. Represses both CCA1 and itself. {ECO:0000269|PubMed:12015970, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:9657154}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00654 | PBM | Transfer from LOC_Os08g06110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010542804.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with peak levels occurring around 1 hour after dawn. Up-regulated by APRR1/TOC1 and transiently by light treatment. Down-regulated by APRR5, APRR7 and APRR9. {ECO:0000269|PubMed:12574129, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:19286557, ECO:0000269|PubMed:20233950, ECO:0000269|PubMed:9657154}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010542804.1 | 0.0 | PREDICTED: protein LHY-like isoform X3 | ||||
Swissprot | Q6R0H1 | 0.0 | LHY_ARATH; Protein LHY | ||||
TrEMBL | A0A061DT31 | 0.0 | A0A061DT31_THECC; Homeodomain-like superfamily protein isoform 1 | ||||
STRING | XP_010542800.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.4 | 1e-150 | MYB_related family protein |