PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542737.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 275aa    MW: 31331.6 Da    PI: 5.6241
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542737.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l ++++++G  +W++ ++  g++R++k+c++rw +yl
   XP_010542737.1 14 KGPWTPEEDQILTNYIRLYGHSNWRALPKQAGLHRCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.83.8e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+e +++++  lG++ W++Ia++++ gRt++++k+ w+++l
   XP_010542737.1  67 RGNFTPQEEETIIKLHGILGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-26564IPR009057Homeodomain-like
PROSITE profilePS5129416.699961IPR017930Myb domain
SuperFamilySSF466895.87E-3110108IPR009057Homeodomain-like
SMARTSM007171.1E-141363IPR001005SANT/Myb domain
PfamPF002493.1E-151461IPR001005SANT/Myb domain
CDDcd001672.32E-101661No hitNo description
PROSITE profilePS5129425.28162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-2665116IPR009057Homeodomain-like
SMARTSM007174.0E-1466114IPR001005SANT/Myb domain
PfamPF002491.6E-1467112IPR001005SANT/Myb domain
CDDcd001672.16E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGRAPCCEKM GMKKGPWTPE EDQILTNYIR LYGHSNWRAL PKQAGLHRCG KSCRLRWINY  60
LRPDIKRGNF TPQEEETIIK LHGILGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRINSNN  120
NDIMRHAKDK NPSSSSSSSS IERDQGLGSK GGEAIDGGME RPTSPLQSGN DTDTSFENVD  180
NNKEEGFPML IDESFWSEIS SIMDNNSLDD KKIEMIWTKA NSFQDHGDDH YNDDDDDVKN  240
RSKGRHQSEL YNNGDVEYWF GLLTGAEELS DIPEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27121185110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542737.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542737.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ9SJX82e-90MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A3N6QQQ66e-94A0A3N6QQQ6_BRACR; Uncharacterized protein
STRINGXP_010542737.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-91myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]