PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542706.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 348aa    MW: 39049.2 Da    PI: 9.8853
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542706.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.3e-31282340360
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++ +tYe eHnh+k
  XP_010542706.1 282 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLMVTYEAEHNHPK 340
                     99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.2E-18233278IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.9E-33268340IPR003657WRKY domain
PROSITE profilePS5081130.136275341IPR003657WRKY domain
SuperFamilySSF1182909.42E-27278340IPR003657WRKY domain
SMARTSM007741.1E-37280340IPR003657WRKY domain
PfamPF031061.5E-26282339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEEIEEANKA AVESCHRVIS LVCRAQQDHG YGRDLVSETE EAVFRFKRVD SLLSSSVGHA  60
RVRRAKKVQT HLSQNIFLDP CHLRTEPPSQ KKTQFLRSGF HELSLLPSDS LSLGNLSLGL  120
SSNAKGPLLQ LTQQANYHNL LHKQQQHQQQ LHERLHAHQQ QQQKHQAEIL LRKCNGGISL  180
SFDNSSCTPT MSSTRSFVSS LSIDGSVANV EGKNSFHLIG APSSTDQNPQ PLKRKCSGKE  240
EEGSIKCSSS SRCHCSKKRK HRVKRSIRVP AISNKVADIP PDDYSWRKYG QKPIKGSPHP  300
RGYYKCSSMR GCPARKHVER CLEDPSMLMV TYEAEHNHPK MSSQSVTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-19268338271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542706.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542706.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-169WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLV4M9740.0V4M974_EUTSA; Uncharacterized protein
STRINGXP_010542706.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.17e-88WRKY DNA-binding protein 21