PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010542653.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 347aa MW: 36910.9 Da PI: 9.6015

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010542653.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.7e-39	91	149	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e lkcprCds+ntkfCyynnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+nkk XP_010542653.1 91 EGPLKCPRCDSANTKFCYYNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKG 149 6679****************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-32	78	145	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.0E-33	93	148	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.683	94	148	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	96	132	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MVFSPVSSFI DPPNWPQTNS NYQYHQQQER GSVINAHEGL SHQLPPLPQN PNHTHHHAPP 60 ASAVGGGGTT AGLGGGPMAE RARLAKVPQP EGPLKCPRCD SANTKFCYYN NYSLSQPRHF 120 CKACRRYWTR GGALRNVPVG GGCRRNKKGK AGNTSKTSSS NNNNQNKLTG VDPSPTTAPT 180 NSQFPFLPTL QNLSQLGNIG LNLAAISGNN QGHIGLRDNG NGNSNSLMNE LGFLHVGTGA 240 NTSGLMISNN ENNILTSNQF ALFDPTTIGL YAFQSEGNMG NNIVGLSSSS ASMAAARVSQ 300 MASVKMEETH LANLLRTVPG LTANNQSNQY WTGSGNFPGS SSNDHLL

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MVFSPVSSFI DPPNWPQTNS NYQYHQQQER GSVINAHEGL SHQLPPLPQN PNHTHHHAPP  60
ASAVGGGGTT AGLGGGPMAE RARLAKVPQP EGPLKCPRCD SANTKFCYYN NYSLSQPRHF  120
CKACRRYWTR GGALRNVPVG GGCRRNKKGK AGNTSKTSSS NNNNQNKLTG VDPSPTTAPT  180
NSQFPFLPTL QNLSQLGNIG LNLAAISGNN QGHIGLRDNG NGNSNSLMNE LGFLHVGTGA  240
NTSGLMISNN ENNILTSNQF ALFDPTTIGL YAFQSEGNMG NNIVGLSSSS ASMAAARVSQ  300
MASVKMEETH LANLLRTVPG LTANNQSNQY WTGSGNFPGS SSNDHLL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00281	DAP	Transfer from AT2G28810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010542653.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010542653.1	0.0	PREDICTED: dof zinc finger protein DOF2.2 isoform X2
Swissprot	Q9ZV33	1e-106	DOF22_ARATH; Dof zinc finger protein DOF2.2
TrEMBL	A0A178VZ40	1e-104	A0A178VZ40_ARATH; Uncharacterized protein
STRING	XP_010542652.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.1	8e-93	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]