PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542652.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Dof
Protein Properties Length: 349aa    MW: 37152.2 Da    PI: 9.6015
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542652.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.85.7e-3993151361
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     e  lkcprCds+ntkfCyynnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+nkk 
  XP_010542652.1  93 EGPLKCPRCDSANTKFCYYNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKG 151
                     6679****************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3280147IPR003851Zinc finger, Dof-type
PfamPF027015.0E-3395150IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.68396150IPR003851Zinc finger, Dof-type
PROSITE patternPS01361098134IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVFSPVSSFI DPPNWPQLQT NSNYQYHQQQ ERGSVINAHE GLSHQLPPLP QNPNHTHHHA  60
PPASAVGGGG TTAGLGGGPM AERARLAKVP QPEGPLKCPR CDSANTKFCY YNNYSLSQPR  120
HFCKACRRYW TRGGALRNVP VGGGCRRNKK GKAGNTSKTS SSNNNNQNKL TGVDPSPTTA  180
PTNSQFPFLP TLQNLSQLGN IGLNLAAISG NNQGHIGLRD NGNGNSNSLM NELGFLHVGT  240
GANTSGLMIS NNENNILTSN QFALFDPTTI GLYAFQSEGN MGNNIVGLSS SSASMAAARV  300
SQMASVKMEE THLANLLRTV PGLTANNQSN QYWTGSGNFP GSSSNDHLL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00281DAPTransfer from AT2G28810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542652.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542652.10.0PREDICTED: dof zinc finger protein DOF2.2 isoform X1
SwissprotQ9ZV331e-106DOF22_ARATH; Dof zinc finger protein DOF2.2
TrEMBLA0A178VZ401e-104A0A178VZ40_ARATH; Uncharacterized protein
STRINGXP_010542652.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53361749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28810.17e-93Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]