PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010542595.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | NF-YC | ||||||||
Protein Properties | Length: 210aa MW: 23844.4 Da PI: 5.5507 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 42.5 | 1.4e-13 | 106 | 192 | 13 | 99 |
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++d k ++P+ ri++i++ ++ + i+ +a l+ ka e+fi ++ ++ + + k++ ++ ++++v++ + ++fl d vp++ XP_010542595.1 106 VEDAKLCRFPMNRIRRIMRIENVNSHITQDAVFLVNKATEMFIERFSEDAYDCSIQDKKKFIHYKHLSSVVSNEERYEFLSDYVPEK 192 67888899**************99************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.04E-19 | 113 | 191 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.0E-18 | 113 | 176 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 4.1E-23 | 114 | 191 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MASSKKRKKD DKEKEKPRSN GATNMKANKK QNKVNGGGAA AVEEQEVYEI SENSTGESEE 60 IERGEKIQKS NGRSKSRNGK SVGIPKTRRK DDDDDDEEEE DGGGGVEDAK LCRFPMNRIR 120 RIMRIENVNS HITQDAVFLV NKATEMFIER FSEDAYDCSI QDKKKFIHYK HLSSVVSNEE 180 RYEFLSDYVP EKLKAEDALE QWKAAVTDAG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 4 | 8 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010542595.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010542595.1 | 1e-153 | PREDICTED: DNA polymerase epsilon subunit C | ||||
TrEMBL | Q0WP19 | 6e-66 | Q0WP19_ARATH; Uncharacterized protein At1g07980 | ||||
STRING | XP_010542595.1 | 1e-152 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11190 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 4e-52 | nuclear factor Y, subunit C10 |