PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010542556.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 321aa MW: 37188.8 Da PI: 8.0277

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010542556.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.2	2.8e-48	25	157	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 pGfrFhPtdeelv +yL +kv++k++++ ++i++vdiyk++Pwd+p + +++eke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s XP_010542556.1 25 PGFRFHPTDEELVGFYLSRKVQKKSIKM-DIIQHVDIYKFDPWDIP-RWSNTEKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSDcn 117 9*************************.99***********.56677899*********************************977 PP NAM 96 .......kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++glkktLv+y g+a kg+kt+W+mhe+rl XP_010542556.1 118 ksatdqsNSVVIGLKKTLVYYLGSAGKGTKTEWMMHEFRL 157 66666555555*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	49.484	23	185	IPR003441	NAC domain
SuperFamily	SSF101941	9.02E-52	24	185	IPR003441	NAC domain
Pfam	PF02365	3.9E-25	25	157	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MLIGDSIVNH NNRREDDGGD IFPLPGFRFH PTDEELVGFY LSRKVQKKSI KMDIIQHVDI 60 YKFDPWDIPR WSNTEKEGYF FCKRGRKYRN SIRPNRVTGS GFWKATGIDK PVYSDCNKSA 120 TDQSNSVVIG LKKTLVYYLG SAGKGTKTEW MMHEFRLPNT TYDNPNSTSP SQEAEVWTLC 180 RIFKRHVSCK KYTPDWRESA SAKHFRPHNK KPHTSSDSLR QETYINFGDI DDTNLPILPY 240 TDGKKNILDE NKTYEYRNMF HHSNQLSSMP PHDMQIGPTP LPVGPVHEFW NVLEDNDHVL 300 SYGNWDELRS MVEFAIGPSS V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-45	25	191	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-45	25	191	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-45	25	191	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-45	25	191	19	171	NO APICAL MERISTEM PROTEIN
4dul_A	4e-45	25	191	19	171	NAC domain-containing protein 19
4dul_B	4e-45	25	191	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010542556.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010542556.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	8e-79	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	V4NQ84	1e-105	V4NQ84_EUTSA; Uncharacterized protein
STRING	XP_010542556.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12910.1	1e-105	NAC family protein

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]