PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542544.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 319aa    MW: 35997.8 Da    PI: 8.2656
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542544.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.42e-51181451129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhP+d+elv++yL k++ +++ +    + +vd++k+ePwdLp+++  + +ewyf+s+rd+ky+tg r+nrat++gyWkatgkd++v++ 
  XP_010542544.1  18 LPPGFRFHPRDDELVCDYLMKRLLRSQRHQPVLLLDVDLNKSEPWDLPQRACVGGREWYFYSQRDRKYTTGLRTNRATATGYWKATGKDRAVKR- 111
                     79********************99999777566***************8877899**************************************9. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +++lvg++ktLvfykgrapkg+ktdWvmhe+rle
  XP_010542544.1 112 RDALVGMRKTLVFYKGRAPKGRKTDWVMHEFRLE 145
                     999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5816171IPR003441NAC domain
PROSITE profilePS5100556.14618170IPR003441NAC domain
PfamPF023655.1E-2619144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEKDERKGEI IRVVEGKLPP GFRFHPRDDE LVCDYLMKRL LRSQRHQPVL LLDVDLNKSE  60
PWDLPQRACV GGREWYFYSQ RDRKYTTGLR TNRATATGYW KATGKDRAVK RRDALVGMRK  120
TLVFYKGRAP KGRKTDWVMH EFRLEGPFVP PKDSPDSPKE DWVLCRVFYK NREGANKDNM  180
GSCSNETASA SLPPLMDSCI SLGQPDHQEP SSHIINQQVP CFSISSQTQT DPSLPDLTSL  240
VSEPKTPSKN PFPLFTDQAP TMAAGLDAFC SDQMVLRALL NQLTKIDGYL GAKESESFGE  300
GSSQSLLTEV GISTSAWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-491417311171Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542544.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542544.10.0PREDICTED: NAC domain-containing protein 21/22 isoform X1
SwissprotQ84TE61e-151NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A178W7B21e-148A0A178W7B2_ARATH; NAC1
STRINGXP_010542544.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36192859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-136NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]