PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010542479.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

DBB

Protein Properties

Length: 234aa MW: 26282.6 Da PI: 5.1704

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010542479.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.9	7.3e-07	88	131	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e+ e++ C +++ lC++C ++ H H++v+ XP_010542479.1 88 IQCEVCEKAEAEVLCCSDEAVLCKSCDEKVHTAnklfqrHNRVT 131 57*****************************5578888898886 PP
2	zf-B_box	22.2	2.9e-07	143	179	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ ++e fC +++ llC++C ++Hk H+ XP_010542479.1 143 PLCDICQERTGYVFCLEDRALLCKNCDGAIHKCtsHQ 179 78****99******************9545676 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	2.0E-11	85	132	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.58	85	132	IPR000315	B-box-type zinc finger
CDD	cd00021	1.32E-5	88	132	No hit	No description
PROSITE profile	PS50119	9.001	140	184	IPR000315	B-box-type zinc finger
SMART	SM00336	1.8E-9	140	183	IPR000315	B-box-type zinc finger
CDD	cd00021	7.98E-7	143	182	No hit	No description
Pfam	PF00643	1.2E-5	143	179	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MCSRELVNVL ASAAILLWSN YFITRRSGGL FFRPINAFWA ELLGELRDEN FQDFAAWEGN 60 GEFERTMLQN SSLLTFQGRT QTNPEMKIQC EVCEKAEAEV LCCSDEAVLC KSCDEKVHTA 120 NKLFQRHNRV TLLKHNSTSS GIPLCDICQE RTGYVFCLED RALLCKNCDG AIHKCTSHQR 180 FLASGVHVSL QSCIEDSECS TSLSSSIFQI HPSGESEAGN SEVDLEKERH EGNR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250\|UniProtKB:Q9SJU5}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010542479.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010542479.2	1e-173	PREDICTED: B-box zinc finger protein 23 isoform X4
Swissprot	O82617	2e-59	BBX23_ARATH; B-box zinc finger protein 23
TrEMBL	D7LY29	1e-59	D7LY29_ARALL; Zinc finger (B-box type) family protein
TrEMBL	E4MXU4	1e-59	E4MXU4_EUTHA; mRNA, clone: RTFL01-35-E09
TrEMBL	V4N0M7	1e-59	V4N0M7_EUTSA; Uncharacterized protein
STRING	XP_010542458.1	1e-156	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10240.1	4e-55	DBB family protein

Publications ? help Back to Top
Zhang X, et al. A PIF1/PIF3-HY5-BBX23 Transcription Factor Cascade Affects Photomorphogenesis. Plant Physiol., 2017. 174(4): p. 2487-2500 [PMID:28687557]