PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010542470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | DBB | ||||||||
Protein Properties | Length: 253aa MW: 28465.2 Da PI: 5.5749 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.8 | 8.2e-07 | 107 | 150 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e+ e++ C +++ lC++C ++ H H++v+ XP_010542470.1 107 IQCEVCEKAEAEVLCCSDEAVLCKSCDEKVHTAnklfqrHNRVT 150 57*****************************5578888898876 PP | |||||||
2 | zf-B_box | 22 | 3.3e-07 | 162 | 198 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ ++e fC +++ llC++C ++Hk H+ XP_010542470.1 162 PLCDICQERTGYVFCLEDRALLCKNCDGAIHKCtsHQ 198 78******99********************9545675 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.0E-11 | 104 | 151 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.58 | 104 | 151 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.09E-5 | 107 | 151 | No hit | No description |
PROSITE profile | PS50119 | 9.001 | 159 | 203 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.8E-9 | 159 | 202 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.4E-5 | 162 | 198 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.68E-7 | 162 | 201 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MCSRELVNVL ASAAILLWSN YFITRRSGGL FFRPINAFWA ELLGELRDEN FQDFAAWEGN 60 GEFERTMLQN SSLLTFQGSF LVLLLINVQS HLPYTSRRTQ TNPEMKIQCE VCEKAEAEVL 120 CCSDEAVLCK SCDEKVHTAN KLFQRHNRVT LLKHNSTSSG IPLCDICQER TGYVFCLEDR 180 ALLCKNCDGA IHKCTSHQRF LASGVHVSLQ SCIEDSECST SLSSSIFQIH PSGESEAGNS 240 EVDLEKERHE GNR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010542470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010542470.2 | 0.0 | PREDICTED: B-box zinc finger protein 23 isoform X3 | ||||
Swissprot | O82617 | 3e-59 | BBX23_ARATH; B-box zinc finger protein 23 | ||||
TrEMBL | D7LY29 | 1e-59 | D7LY29_ARALL; Zinc finger (B-box type) family protein | ||||
STRING | XP_010542458.1 | 1e-174 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10240.1 | 4e-55 | DBB family protein |
Publications ? help Back to Top | |||
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