PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542466.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 270aa    MW: 30655.2 Da    PI: 7.6816
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542466.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-172875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEde+lv+++++ G g W+t +++ g+ R++k+c++rw +yl
   XP_010542466.1 28 RGAWTEEEDEKLVRCIEKEGEGKWRTMPKRAGLLRCGKSCRLRWMNYL 75
                     89******************************99************97 PP
2Myb_DNA-binding506.9e-1681126148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg  +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_010542466.1  81 RGHISPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 126
                      67779*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5812375IPR017930Myb domain
SuperFamilySSF466894.12E-2925122IPR009057Homeodomain-like
SMARTSM007172.1E-132777IPR001005SANT/Myb domain
PfamPF002492.0E-152875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-212982IPR009057Homeodomain-like
CDDcd001671.26E-113075No hitNo description
PROSITE profilePS5129425.24776130IPR017930Myb domain
SMARTSM007173.8E-1580128IPR001005SANT/Myb domain
PfamPF002499.6E-1581126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-2583131IPR009057Homeodomain-like
CDDcd001675.07E-1285126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MRKRRTRSPR REMTSSSSGG GNTMKMKRGA WTEEEDEKLV RCIEKEGEGK WRTMPKRAGL  60
LRCGKSCRLR WMNYLRPSVK RGHISPDEED LILRLHRLLG NRWSLIAGRI PGRTDNEIKN  120
YWNTHLSKKL IRRGIDPRTH KPLDAAAAND KSIQVSSSSC EHHHLQTAIE SGDGTAGFNE  180
NILSTGHGYD DDHHHHHQFM VQNSHSGLDD FDFCYDDTFS SFLDSLINED PFGNSCQQPI  240
HLGECSHDIV GGNVTSSIAS DDHVMLPENK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25261305108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542466.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542466.10.0PREDICTED: transcription repressor MYB5
SwissprotQ388509e-92MYB5_ARATH; Transcription repressor MYB5
TrEMBLD7L1F44e-91D7L1F4_ARALL; Uncharacterized protein
STRINGXP_010542466.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-94myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]