PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542465.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family DBB
Protein Properties Length: 267aa    MW: 30011.9 Da    PI: 5.7492
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542465.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.68.9e-07121164441
        zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                       C+ +e+ e++  C +++  lC++C ++ H        H++v+
  XP_010542465.1 121 IQCEVCEKAEAEVLCCSDEAVLCKSCDEKVHTAnklfqrHNRVT 164
                     57*****************************5578888898876 PP
2zf-B_box21.93.6e-07176212438
        zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 
                     + C+ ++e     fC +++ llC++C  ++Hk   H+
  XP_010542465.1 176 PLCDICQERTGYVFCLEDRALLCKNCDGAIHKCtsHQ 212
                     78******99********************9545675 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.0E-11118165IPR000315B-box-type zinc finger
PROSITE profilePS5011910.58118165IPR000315B-box-type zinc finger
CDDcd000211.25E-5121165No hitNo description
PROSITE profilePS501199.001173217IPR000315B-box-type zinc finger
SMARTSM003361.8E-9173216IPR000315B-box-type zinc finger
PfamPF006431.5E-5176212IPR000315B-box-type zinc finger
CDDcd000217.73E-7176215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MIFCLAHDSR SHAGLFFRPI NAFWAELLGE LRDENFQDFA AWEGNGEFER TMLQNSSLLT  60
FQGSFLVLLL INVQSHLPYT SRERISQQLP DFVNLAIYKI QQSSVSKISV GRTQTNPEMK  120
IQCEVCEKAE AEVLCCSDEA VLCKSCDEKV HTANKLFQRH NRVTLLKHNS TSSGIPLCDI  180
CQERTGYVFC LEDRALLCKN CDGAIHKCTS HQRFLASGVH VSLQSCIEDS ECSTSLSSSI  240
FQIHPSGESE AGNSEVDLEK ERHEGNR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542465.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542465.10.0PREDICTED: B-box zinc finger protein 23 isoform X2
SwissprotO826176e-59BBX23_ARATH; B-box zinc finger protein 23
TrEMBLD7LY293e-59D7LY29_ARALL; Zinc finger (B-box type) family protein
STRINGXP_010542458.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10240.11e-54DBB family protein
Publications ? help Back to Top
  1. Zhang X, et al.
    A PIF1/PIF3-HY5-BBX23 Transcription Factor Cascade Affects Photomorphogenesis.
    Plant Physiol., 2017. 174(4): p. 2487-2500
    [PMID:28687557]