PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010542458.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

DBB

Protein Properties

Length: 282aa MW: 31695.9 Da PI: 5.8207

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010542458.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.5	9.7e-07	136	179	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e+ e++ C +++ lC++C ++ H H++v+ XP_010542458.1 136 IQCEVCEKAEAEVLCCSDEAVLCKSCDEKVHTAnklfqrHNRVT 179 57*****************************5578888898876 PP
2	zf-B_box	21.8	3.9e-07	191	227	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ ++e fC +++ llC++C ++Hk H+ XP_010542458.1 191 PLCDICQERTGYVFCLEDRALLCKNCDGAIHKCtsHQ 227 78****99******************9545675 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	2.0E-11	133	180	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.58	133	180	IPR000315	B-box-type zinc finger
CDD	cd00021	5.19E-6	136	180	No hit	No description
SMART	SM00336	1.8E-9	188	231	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.001	188	232	IPR000315	B-box-type zinc finger
CDD	cd00021	2.99E-7	191	230	No hit	No description
Pfam	PF00643	1.6E-5	191	227	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MCSRELVNVL ASAAILLWSN YFITRRSGGL FFRPINAFWA ELLGELRDEN FQDFAAWEGN 60 GEFERTMLQN SSLLTFQGSF LVLLLINVQS HLPYTSRERI SQQLPDFVNL AIYKIQQSSV 120 SKISVGRTQT NPEMKIQCEV CEKAEAEVLC CSDEAVLCKS CDEKVHTANK LFQRHNRVTL 180 LKHNSTSSGI PLCDICQERT GYVFCLEDRA LLCKNCDGAI HKCTSHQRFL ASGVHVSLQS 240 CIEDSECSTS LSSSIFQIHP SGESEAGNSE VDLEKERHEG NR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010542458.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010542458.2	0.0	PREDICTED: uncharacterized protein LOC104815661 isoform X1
STRING	XP_010542458.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12502	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10240.1	7e-55	DBB family protein