PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542414.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 298aa    MW: 32438.7 Da    PI: 9.0545
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542414.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.6e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +++++G+g Wk I r          R+  ++k++w+++
   XP_010542414.1  5 KQKWTAEEEEALLAGIAKHGSGKWKNILRDPDfaphlIQRSNIDLKDKWRNL 56
                     79****************************999999967***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.567161IPR017930Myb domain
SuperFamilySSF466893.16E-15259IPR009057Homeodomain-like
SMARTSM007173.2E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-14556IPR009057Homeodomain-like
PfamPF002491.1E-8556IPR001005SANT/Myb domain
CDDcd116607.15E-21657No hitNo description
SMARTSM005263.8E-12133198IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.1E-10135201IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.414135203IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467859.25E-13135210IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005387.5E-9137196IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEALLAGI AKHGSGKWKN ILRDPDFAPH LIQRSNIDLK DKWRNLNVSS  60
SGQSTREKSR TPKIKAAAIA LAAAGTPPTL AARTPSVASL TPNTPDSSPA LSLVSNGPSP  120
MDVDDLSNST VDVKNNPRYN AMVFEAISTI NNVNGVDIFG IFSFIEKRHN APQNFRKLLG  180
SRLRRLVSQG KLEKVENRYR ICNDTRMATK ETPALNHLTK PRLPSTPPVA TAMAETREEA  240
ATAAAYKVAE AENKAFLAAE AVKEAEGTAK LAEDSNSMLQ IALDIYELCD RGEEVFVG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542414.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542414.10.0PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A1Q3CXY01e-108A0A1Q3CXY0_CEPFO; Myb_DNA-binding domain-containing protein/Linker_histone domain-containing protein
STRINGXP_010542413.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.23e-52MYB_related family protein