PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010542292.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ERF | ||||||||
Protein Properties | Length: 161aa MW: 17533.8 Da PI: 9.5576 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.9 | 1.6e-20 | 18 | 68 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp gk++r++lg+f+tae+Aa+a++aa+++++g+ XP_010542292.1 18 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEDAARAYDAAAREFRGA 68 59*******.**********8...557*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.342 | 18 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-33 | 18 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.28E-23 | 18 | 76 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.1E-14 | 18 | 67 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.13E-20 | 18 | 75 | No hit | No description |
SMART | SM00380 | 1.7E-38 | 18 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MTKRPDPVSP NPSAKEIRYR GVRKRPWGRY AAEIRDPGKK TRVWLGTFDT AEDAARAYDA 60 AAREFRGAKA KTNFPSPLAP SPNHSTTTLD CASPPELQLC LGGRACYQIP VARPVLFLNL 120 IGMGRQSDSD SSSVVDFEGG SGKRSQPLDL DLNLPPPPEQ A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 14 | 75 | 1 | 63 | ATERF1 |
3gcc_A | 1e-21 | 14 | 75 | 1 | 63 | ATERF1 |
5wx9_A | 3e-21 | 6 | 78 | 2 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010542292.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT369549 | 9e-42 | KT369549.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010542292.1 | 1e-115 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
Refseq | XP_010542293.1 | 1e-115 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q9MAI5 | 2e-53 | ERF79_ARATH; Ethylene-responsive transcription factor 8 | ||||
TrEMBL | D7L402 | 4e-65 | D7L402_ARALL; ATERF-4/ATERF4/ERF4/RAP2.5 | ||||
STRING | XP_010542292.1 | 1e-115 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 1e-43 | ethylene responsive element binding factor 4 |
Publications ? help Back to Top | |||
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