PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542217.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 238aa    MW: 26391.8 Da    PI: 8.7085
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-1791140255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  XP_010542217.1  91 SFRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALAIKG 140
                     69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.67E-3190150No hitNo description
PfamPF008478.2E-1290140IPR001471AP2/ERF domain
SMARTSM003801.2E-3591154IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2191149IPR016177DNA-binding domain
PROSITE profilePS5103222.33991148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-3191149IPR001471AP2/ERF domain
PRINTSPR003677.5E-1092103IPR001471AP2/ERF domain
PRINTSPR003677.5E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MYILETRRPL LPNTVSTANT QTPTSHFSFP PPNFYRCISV PRGVRMQQHP SPPESQAAEM  60
GPERIRRKNP KNKKREIEEE GSQRGVSRHP SFRGVRMRQW GKWVSEIREP RKKSRIWLGT  120
FSTPEMAARA HDVAALAIKG GGAHLNFPEL ACFLPRPASS DPKDIQAAAA AAAAEVAEPP  180
RSPASTVTSS LTSSPLSAAV ADDAFTDLPD LLLDDVAHKI DGFWDSLSYE EPFFLENY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1684148672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542217.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542218.11e-155PREDICTED: ethylene-responsive transcription factor ERF039-like isoform X2
SwissprotQ9ZQP36e-69ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A3P6ACI22e-73A0A3P6ACI2_BRACM; Uncharacterized protein
TrEMBLM4D8832e-73M4D883_BRARP; Uncharacterized protein
STRINGXP_010542217.11e-175(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.13e-67ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]