PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010542116.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 22775.3 Da PI: 6.5161 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 21 | 69 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr++AeIrdp + ++r++lg+f++ae+Aa+a++ a+++l+g XP_010542116.1 21 FRGVRKRP-WGRFAAEIRDPLK---KARVWLGTFDSAEDAARAYDTAARNLRG 69 8*******.**********743...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.6E-38 | 20 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.459 | 20 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.93E-30 | 20 | 77 | No hit | No description |
Pfam | PF00847 | 6.3E-12 | 20 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 21 | 32 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 21 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-21 | 21 | 78 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.8E-10 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
GAPAKPVDLT AAANGLPEIR FRGVRKRPWG RFAAEIRDPL KKARVWLGTF DSAEDAARAY 60 DTAARNLRGP KAKTNFPLPD SPNVNYHHQP YMADGGEGGG GGSEENRGTG FGSSPVNRPA 120 SSSMSSTVES FSGPRVSRPG SEVVVHRKKP VQPRPPDDCR SDCDSSSSVV DDDDDCVLTS 180 SFRKVLPFDL NLPPPMEDHD SGEDLKVTAL CL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 21 | 78 | 6 | 64 | ATERF1 |
3gcc_A | 2e-21 | 21 | 78 | 6 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010542116.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010542116.1 | 1e-153 | PREDICTED: ethylene-responsive transcription factor 3-like, partial | ||||
Swissprot | Q9SXS8 | 6e-39 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A0V0HV08 | 1e-65 | A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like | ||||
STRING | XP_010542116.1 | 1e-153 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 1e-26 | ethylene responsive element binding factor 3 |