PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542089.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 268aa    MW: 29724 Da    PI: 10.3855
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542089.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding409.3e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v+++G g W+tI +          R+  ++k++w++
   XP_010542089.1  5 KQKWTPEEEAALKAGVTKHGAGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.508158IPR017930Myb domain
SuperFamilySSF466895.24E-16270IPR009057Homeodomain-like
SMARTSM007175.6E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-14456IPR009057Homeodomain-like
PfamPF002491.0E-8555IPR001005SANT/Myb domain
CDDcd116608.95E-19656No hitNo description
PROSITE profilePS5150421.406122193IPR005818Linker histone H1/H5, domain H15
SMARTSM005264.6E-11123188IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.2E-14123198IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-13124192IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.6E-8130186IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGAPKQKWTP EEEAALKAGV TKHGAGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMA  60
NGWGSREKSR LAVRRTASLP RQEDNSLAII NTMQSDEEIA DYRPISTISS SALQIAAAPA  120
ARRPNVVRLD NLIMEAITVL KEPGGSNKTT IGAYIEEQYH APADFKRLLS TKLKHLTACG  180
KLMKVKRKYR IPLTTPSHDR KRNFGTFTGR QRISSVSSLR TEPDEVNIIT RSQIDSELAR  240
MKSMDVHEAA LVAARAVAEA EAAVAEAE
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542089.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542089.10.0PREDICTED: telomere repeat-binding factor 1-like, partial
SwissprotQ8VWK41e-131TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLR0GJQ01e-135R0GJQ0_9BRAS; Uncharacterized protein
STRINGXP_010542089.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87222539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-126telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]