PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541907.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 219aa    MW: 24937.1 Da    PI: 9.2766
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541907.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-151259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W +eEd +l  +v+ +G g+W+ I+++ g++R +k+c++rw +yl
   XP_010541907.1 12 RGLWKPEEDMILRSYVETYGEGNWADISQRSGLKRGGKSCRLRWKNYL 59
                     788*****************************99************97 PP
2Myb_DNA-binding53.74.7e-1765110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_010541907.1  65 RGGMSPEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 110
                      6789******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.86759IPR017930Myb domain
SuperFamilySSF466891.28E-2910106IPR009057Homeodomain-like
SMARTSM007175.9E-141161IPR001005SANT/Myb domain
PfamPF002492.2E-141259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-221366IPR009057Homeodomain-like
CDDcd001674.05E-101559No hitNo description
PROSITE profilePS5129425.82260114IPR017930Myb domain
SMARTSM007171.7E-1664112IPR001005SANT/Myb domain
PfamPF002492.0E-1565110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2467113IPR009057Homeodomain-like
CDDcd001674.81E-1268110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEKREGKSQV KRGLWKPEED MILRSYVETY GEGNWADISQ RSGLKRGGKS CRLRWKNYLR  60
PNIKRGGMSP EEEDLIIRMH KLLGNRWSLI AGRLPGRTDN EVKNYWNTHL NKKCESRKRK  120
ADELKGKTQD IDTSTKDKQC VSQSLMASTE VIDRGVEEAN TGKREDSIVT TSTWMEGTNG  180
FGYGYGYGIA SPLAFSDYAT TVFDDLQSSF AFADLFPLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-25911324127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541907.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541907.11e-163PREDICTED: transcription factor MYB82-like
SwissprotQ9LTF72e-85MYB82_ARATH; Transcription factor MYB82
TrEMBLR0GVN85e-86R0GVN8_9BRAS; Uncharacterized protein
STRINGXP_010541907.11e-162(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.14e-84myb domain protein 82