PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541808.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Dof
Protein Properties Length: 337aa    MW: 36722.7 Da    PI: 8.4043
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541808.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.14.7e-3962121261
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     k++al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+s
  XP_010541808.1  62 KDQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRS 121
                     7899******************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3058120IPR003851Zinc finger, Dof-type
PfamPF027011.5E-3363120IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.13466120IPR003851Zinc finger, Dof-type
PROSITE patternPS01361068104IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDTAQWPQIV VKPLEEIITN TCPKPPRLQP PPPQQTTTAH GAVAATEAEA AGGGERKARP  60
QKDQALNCPR CNSTNTKFCY YNNYSLTQPR YFCKTCRRYW TEGGSLRNIP VGGGSRKNKR  120
SNYSNGHNHN INNPSNSAPL PAPKKHLSEH HLMSMTQQGL TGQNPKFHET QDLNLRFPHG  180
FRSNLTELIQ YGGNNNSNQV LLPSCSATSA AMTTSSLDLL SSNSGSSNSF MALPSVHHHQ  240
DPSGFSMQDH YKPCTSTSLL GFSLDRGFHH GAQQEDGSGI GERLLFPFED LKLPVPLSSA  300
STTSNHNIIS EINDQKQGGD ATASAGYWTG MLSGGSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541808.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541808.10.0PREDICTED: dof zinc finger protein DOF4.6 isoform X2
SwissprotQ8LAP81e-111DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLA0A397L7651e-121A0A397L765_BRACM; Uncharacterized protein
TrEMBLM4DRV41e-121M4DRV4_BRARP; Uncharacterized protein
STRINGXP_010541804.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.14e-99Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]