PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010541804.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 338aa MW: 36850.9 Da PI: 8.566

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010541804.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.1	4.7e-39	63	122	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k++al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+s XP_010541804.1 63 KDQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRS 122 7899******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-30	59	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-33	64	121	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.134	67	121	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	69	105	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MDTAQWPQKI VVKPLEEIIT NTCPKPPRLQ PPPPQQTTTA HGAVAATEAE AAGGGERKAR 60 PQKDQALNCP RCNSTNTKFC YYNNYSLTQP RYFCKTCRRY WTEGGSLRNI PVGGGSRKNK 120 RSNYSNGHNH NINNPSNSAP LPAPKKHLSE HHLMSMTQQG LTGQNPKFHE TQDLNLRFPH 180 GFRSNLTELI QYGGNNNSNQ VLLPSCSATS AAMTTSSLDL LSSNSGSSNS FMALPSVHHH 240 QDPSGFSMQD HYKPCTSTSL LGFSLDRGFH HGAQQEDGSG IGERLLFPFE DLKLPVPLSS 300 ASTTSNHNII SEINDQKQGG DATASAGYWT GMLSGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010541804.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010541804.1	0.0	PREDICTED: dof zinc finger protein DOF4.6 isoform X1
Swissprot	Q8LAP8	1e-113	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A397L765	1e-123	A0A397L765_BRACM; Uncharacterized protein
TrEMBL	M4DRV4	1e-123	M4DRV4_BRARP; Uncharacterized protein
STRING	XP_010541804.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-101	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]