PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010541791.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Nin-like

Protein Properties

Length: 929aa MW: 102374 Da PI: 6.0225

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010541791.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.7e-29	578	628	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ XP_010541791.1 578 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 628 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	7.85E-5	206	277	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.734	567	648	IPR003035	RWP-RK domain
Pfam	PF02042	7.0E-26	580	628	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.6E-23	832	916	No hit	No description
PROSITE profile	PS51745	25.929	833	915	IPR000270	PB1 domain
SMART	SM00666	1.0E-26	833	915	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	5.4E-27	833	915	No hit	No description
CDD	cd06407	2.06E-37	834	914	No hit	No description
Pfam	PF00564	5.2E-20	834	914	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 929 aa Download sequence Send to blast
MCEPDEDCTR NGAIPPPTRL RELLMDLDDL DLDGSWRLDQ IPYLSSSNHF FSPLVVSSSS 60 ELPCSPLWAF SDGGGTAAVP DEKLSPASGV PPFRLADYPI FLPCAASSMA ENTAENGNSV 120 PFPSPLMGLV PPENTDNYCV IKERMTQALR YFKESTEQHV LAQVWAPVIK NGRELLTTLG 180 QPFVLNPNGN GLNQYRMISL TYMFSVDSES DIELGLPGRV YRQKLPEWTP NVQYYSSREF 240 SRLDHALHYN VRGTLALPVF NPSGQSCIGV VELIMTSEKI HYAPEVDRVC KALEAVNLKS 300 SEILDHQTTQ ICNEGRQNAL AEILEILTVV CETYKLPLAQ TWVPCQHRSV LANGGGLKKS 360 CTSFDGSCMG QVCMSTTDVA CYVVDAHVWG FRDACLEHHL QKGQGVAGRA FLNRSSCFCR 420 DVTKFCKTQY PLVHYALMFK LTSCFAICLQ SSHTGDDDYI LEFFLPPSIT DETKQDSLLG 480 SLLATMKLYF QNLRVASGIS FGEEADEVSV EFIKALPDKK INSRIERIRV SSGFASNVGE 540 MRLNPQPVVP SSEPAKEMGN MAGDNGKKKP ERKRGKTEKT ISLDVLQQYF TGSLKDAAKS 600 LGVCPTTMKR ICRQHGISRW PSRKIKKVNR SITKLKRVIE SVQGTDGSLD LTSMAVGSIP 660 WTNGQTTAQP LNSHSGDDKE PELSKNNGSI GHSPHEPHGS PELPINGCKR SRTRDESVGT 720 PTSHGSCGCS PRDDTKSLNQ EPIFTVGSSP GLPFQQCLRD LDVSAASFSM PFRGIPIEDA 780 GSFKDLRNLC PSAAAEEKLQ ESNWLNNGNI ICHPPKEEGM GIARVPSRSD MRSVTIKAIY 840 KEDIIRFRIS SSSGLMELKE EVTKRLKQDA GTFDIKYLDD DNEWVLIACD ADLQECLDVS 900 RSSGSNNVRL LVHDVTMNLG SSCESTGEL

Sequence ? help Back to Top

Protein Sequence Length: 929 aa Download sequence Send to blast

MCEPDEDCTR NGAIPPPTRL RELLMDLDDL DLDGSWRLDQ IPYLSSSNHF FSPLVVSSSS  60
ELPCSPLWAF SDGGGTAAVP DEKLSPASGV PPFRLADYPI FLPCAASSMA ENTAENGNSV  120
PFPSPLMGLV PPENTDNYCV IKERMTQALR YFKESTEQHV LAQVWAPVIK NGRELLTTLG  180
QPFVLNPNGN GLNQYRMISL TYMFSVDSES DIELGLPGRV YRQKLPEWTP NVQYYSSREF  240
SRLDHALHYN VRGTLALPVF NPSGQSCIGV VELIMTSEKI HYAPEVDRVC KALEAVNLKS  300
SEILDHQTTQ ICNEGRQNAL AEILEILTVV CETYKLPLAQ TWVPCQHRSV LANGGGLKKS  360
CTSFDGSCMG QVCMSTTDVA CYVVDAHVWG FRDACLEHHL QKGQGVAGRA FLNRSSCFCR  420
DVTKFCKTQY PLVHYALMFK LTSCFAICLQ SSHTGDDDYI LEFFLPPSIT DETKQDSLLG  480
SLLATMKLYF QNLRVASGIS FGEEADEVSV EFIKALPDKK INSRIERIRV SSGFASNVGE  540
MRLNPQPVVP SSEPAKEMGN MAGDNGKKKP ERKRGKTEKT ISLDVLQQYF TGSLKDAAKS  600
LGVCPTTMKR ICRQHGISRW PSRKIKKVNR SITKLKRVIE SVQGTDGSLD LTSMAVGSIP  660
WTNGQTTAQP LNSHSGDDKE PELSKNNGSI GHSPHEPHGS PELPINGCKR SRTRDESVGT  720
PTSHGSCGCS PRDDTKSLNQ EPIFTVGSSP GLPFQQCLRD LDVSAASFSM PFRGIPIEDA  780
GSFKDLRNLC PSAAAEEKLQ ESNWLNNGNI ICHPPKEEGM GIARVPSRSD MRSVTIKAIY  840
KEDIIRFRIS SSSGLMELKE EVTKRLKQDA GTFDIKYLDD DNEWVLIACD ADLQECLDVS  900
RSSGSNNVRL LVHDVTMNLG SSCESTGEL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010541791.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010541791.1	0.0	PREDICTED: protein NLP7-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	V4MHY8	0.0	V4MHY8_EUTSA; Uncharacterized protein
STRING	XP_010541791.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]