PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541778.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARF
Protein Properties Length: 612aa    MW: 69330.9 Da    PI: 6.4656
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541778.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.35.2e-22119218197
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f kvlt sd++++g +++ +++a+++     +++++ +++l+ +d++g +W++k+ +r++++r++lt+GW+ Fv +++L +gD++v    +++++
  XP_010541778.1 119 FSKVLTASDTSTHGGFSVLRRHAKKClppldMSQPNPTQELVARDLHGCEWKFKHVFRGQPRRHLLTSGWSTFVTSKKLVAGDTFVCL--REENG 211
                     88****************************9666667779**********************************************99..55899 PP

                     ..EEEEE CS
              B3  91 elvvkvf 97 
                     +l+v+v 
  XP_010541778.1 212 KLRVGVS 218
                     9999986 PP
2Auxin_resp104.71.1e-34244323183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t+++F+v+Y+Pr+  s+F+++++k+++a+++k+svGmRfkm+fe+eds  r++sGtvv v+d++p +W +SkWr+L+
  XP_010541778.1 244 ASHAIHTQTMFTVFYKPRT--SQFIISLNKYLEAINNKFSVGMRFKMRFEGEDSLLRSYSGTVVTVNDCSP-HWIDSKWRCLE 323
                     789***************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-36112247IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-35113231IPR015300DNA-binding pseudobarrel domain
CDDcd100179.46E-20117217No hitNo description
PROSITE profilePS5086311.279119221IPR003340B3 DNA binding domain
SMARTSM010192.9E-21119221IPR003340B3 DNA binding domain
PfamPF023622.2E-19119217IPR003340B3 DNA binding domain
PfamPF065073.6E-31244322IPR010525Auxin response factor
PfamPF023093.3E-5502556IPR033389AUX/IAA domain
SuperFamilySSF542777.36E-12519595No hitNo description
PROSITE profilePS5174526.238520600IPR000270PB1 domain
PfamPF023095.4E-7565607IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MENRGDDCGG GYLHEVLWKL CAGPLVDVPR RDDFVYYFPQ GHMEQLEAST NQDLNQMKPL  60
FDLPAKILCR VINVILQVEK DTDEVYSQIT LLPTGTQVDK PTCPDPCVPA PQRPTVHSFS  120
KVLTASDTST HGGFSVLRRH AKKCLPPLDM SQPNPTQELV ARDLHGCEWK FKHVFRGQPR  180
RHLLTSGWST FVTSKKLVAG DTFVCLREEN GKLRVGVSHA VRQQSMPSSM ISGQSMHLGV  240
LATASHAIHT QTMFTVFYKP RTSQFIISLN KYLEAINNKF SVGMRFKMRF EGEDSLLRSY  300
SGTVVTVNDC SPHWIDSKWR CLEVQWDEPA LISRPDRVSP WEIKSFVPSS GNAAQSVTLN  360
NKRPWQVSEV SGFDLGSATS NLWNSTLTHS HELNQSCITY QTSPSEHCYL DTTKNAYEWL  420
MNCCYPVPPR EILTDDRMVF SGEEKRPEAV RLFGIDLVSN STPATPAVEK TTHVLPIHPT  480
VEAESDHKSE VSKVSEEKNN RQERMQEVVW LKEVQSKQNR SRTKVKMQGV GVGRGVELSA  540
MEGYDELIEE LERLFDIRGG GLRDEWEIVY MDDEGDMMLV GDDPWPEFCS MVKRIFICSK  600
DDVKRLSPIV LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-15033445353Auxin response factor 1
4ldw_A1e-15033445353Auxin response factor 1
4ldw_B1e-15033445353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541778.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541778.10.0PREDICTED: auxin response factor 9-like isoform X2
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLV4P5Z30.0V4P5Z3_EUTSA; Auxin response factor
STRINGXP_010541770.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9