PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010541775.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ARF | ||||||||
Protein Properties | Length: 624aa MW: 70536.2 Da PI: 6.4689 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.3 | 5.4e-22 | 131 | 230 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f kvlt sd++++g +++ +++a+++ +++++ +++l+ +d++g +W++k+ +r++++r++lt+GW+ Fv +++L +gD++v +++++ XP_010541775.1 131 FSKVLTASDTSTHGGFSVLRRHAKKClppldMSQPNPTQELVARDLHGCEWKFKHVFRGQPRRHLLTSGWSTFVTSKKLVAGDTFVCL--REENG 223 88****************************9666667779**********************************************99..55899 PP ..EEEEE CS B3 91 elvvkvf 97 +l+v+v XP_010541775.1 224 KLRVGVS 230 9999986 PP | |||||||
2 | Auxin_resp | 104.6 | 1.2e-34 | 256 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F+v+Y+Pr+ s+F+++++k+++a+++k+svGmRfkm+fe+eds r++sGtvv v+d++p +W +SkWr+L+ XP_010541775.1 256 ASHAIHTQTMFTVFYKPRT--SQFIISLNKYLEAINNKFSVGMRFKMRFEGEDSLLRSYSGTVVTVNDCSP-HWIDSKWRCLE 335 789***************6..9*************************************************.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-36 | 124 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-35 | 125 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.06E-19 | 129 | 229 | No hit | No description |
SMART | SM01019 | 2.9E-21 | 131 | 233 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.279 | 131 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-19 | 131 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.7E-31 | 256 | 334 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.4E-5 | 514 | 568 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 7.36E-12 | 531 | 607 | No hit | No description |
PROSITE profile | PS51745 | 26.238 | 532 | 612 | IPR000270 | PB1 domain |
Pfam | PF02309 | 5.6E-7 | 577 | 619 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MENRGGAFLH SDIHLGGDDC GGGYLHEVLW KLCAGPLVDV PRRDDFVYYF PQGHMEQLEA 60 STNQDLNQMK PLFDLPAKIL CRVINVILQV EKDTDEVYSQ ITLLPTGTQV DKPTCPDPCV 120 PAPQRPTVHS FSKVLTASDT STHGGFSVLR RHAKKCLPPL DMSQPNPTQE LVARDLHGCE 180 WKFKHVFRGQ PRRHLLTSGW STFVTSKKLV AGDTFVCLRE ENGKLRVGVS HAVRQQSMPS 240 SMISGQSMHL GVLATASHAI HTQTMFTVFY KPRTSQFIIS LNKYLEAINN KFSVGMRFKM 300 RFEGEDSLLR SYSGTVVTVN DCSPHWIDSK WRCLEVQWDE PALISRPDRV SPWEIKSFVP 360 SSGNAAQSVT LNNKRPWQVS EVSGFDLGSA TSNLWNSTLT HSHELNQSCI TYQTSPSEHC 420 YLDTTKNAYE WLMNCCYPVP PREILTDDRM VFSGEEKRPE AVRLFGIDLV SNSTPATPAV 480 EKTTHVLPIH PTVEAESDHK SEVSKVSEEK NNRQERMQEV VWLKEVQSKQ NRSRTKVKMQ 540 GVGVGRGVEL SAMEGYDELI EELERLFDIR GGGLRDEWEI VYMDDEGDMM LVGDDPWPEF 600 CSMVKRIFIC SKDDVKRLSP IVLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-150 | 22 | 356 | 12 | 353 | Auxin response factor 1 |
4ldw_A | 1e-150 | 22 | 356 | 12 | 353 | Auxin response factor 1 |
4ldw_B | 1e-150 | 22 | 356 | 12 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010541775.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010541770.1 | 0.0 | PREDICTED: auxin response factor 9-like isoform X1 | ||||
Refseq | XP_010541775.1 | 0.0 | PREDICTED: auxin response factor 9-like isoform X1 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | V4P5Z3 | 0.0 | V4P5Z3_EUTSA; Auxin response factor | ||||
STRING | XP_010541770.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |