PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541700.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 219aa    MW: 24247.2 Da    PI: 4.1395
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541700.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19959155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ykGVr +k +g+Wv+eIr p++   r r++lg+f+tae+Aa+a +aa  +l+g
  XP_010541700.1  9 PKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSFDTAEKAARAFDAALYCLRG 59
                    79*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.9E-12959IPR001471AP2/ERF domain
CDDcd000186.50E-29969No hitNo description
SuperFamilySSF541711.05E-201068IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-291068IPR001471AP2/ERF domain
PROSITE profilePS5103222.2471067IPR001471AP2/ERF domain
SMARTSM003802.2E-321073IPR001471AP2/ERF domain
PRINTSPR003672.2E-101122IPR001471AP2/ERF domain
PRINTSPR003672.2E-103349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDQSSSSSPK YKGVRKRKWG KWVSEIRLPN SRERIWLGSF DTAEKAARAF DAALYCLRGP  60
GASFNFPANP PEIPGGCSLT PPEIQAGASR FANENPPPVM MPCGRSATEG DDDDDDDMDE  120
DGISARGENT SHSGGGAASE RVEDINNNYS NDKTAGDYKT APYWPFSWEN DVGPPEELSF  180
FPDESTNLFF PTEQQLPSNF YDDEVGDDFS HHSLNLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-17167172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11117KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541700.11e-161PREDICTED: ethylene-responsive transcription factor ERF016-like
SwissprotQ9C5912e-72ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLD7M0S12e-74D7M0S1_ARALL; Uncharacterized protein
STRINGXP_010541700.11e-161(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.17e-73ERF family protein